Literature DB >> 19754078

Molecular dynamics simulation study of correlated motions in phospholipid bilayer membranes.

Matthew Roark1, Scott E Feller.   

Abstract

A 100 ns simulation of a fluid phase dioleoylphosphatidylcholine bilayer, consisting of 288 lipid molecules at full hydration, has been studied to describe in detail the lateral translational motion of individual lipid molecules. Analysis of the simulation trajectories suggests that correlated motion between neighboring lipid molecules is an important aspect of lipid dynamics. The correlation among neighboring lipids within a monolayer is substantial and surprisingly long-ranged with a decay length of approximately 25 A. This provides a mechanism for the previously published observation that lateral diffusion coefficients computed from molecular dynamics simulations exhibited a strong dependence on the size of the unit cell and for the recent suggestion that lipid flows on that nanoscale are an important component of translational diffusion within membranes. Additionally, we show that diffusive motion is only weakly correlated between lipids in opposing monolayers.

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Year:  2009        PMID: 19754078     DOI: 10.1021/jp902186f

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  15 in total

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5.  Dynamical clustering and a mechanism for raft-like structures in a model lipid membrane.

Authors:  Francis W Starr; Benedikt Hartmann; Jack F Douglas
Journal:  Soft Matter       Date:  2014-05-07       Impact factor: 3.679

6.  Enhanced Lipid Diffusion and Mixing in Accelerated Molecular Dynamics.

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7.  The ELBA force field for coarse-grain modeling of lipid membranes.

Authors:  Mario Orsi; Jonathan W Essex
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8.  Methodologies for the analysis of instantaneous lipid diffusion in MD simulations of large membrane systems.

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9.  Reduced lateral mobility of lipids and proteins in crowded membranes.

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Journal:  PLoS Comput Biol       Date:  2013-04-11       Impact factor: 4.779

Review 10.  Atomistic Monte Carlo simulation of lipid membranes.

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Journal:  Int J Mol Sci       Date:  2014-01-24       Impact factor: 5.923

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