Literature DB >> 19751748

Real-time studies of conformational dynamics of the repair enzyme E. coli formamidopyrimidine-DNA glycosylase and its DNA complexes during catalytic cycle.

Vladimir V Koval1, Nikita A Kuznetsov, Alexander A Ishchenko, Murat K Saparbaev, Olga S Fedorova.   

Abstract

Fpg protein from Escherichia coli belongs to the class of DNA glycosylases/abasic site lyases excising several oxidatively damaged purines in the base excision repair pathway. In this review, we summarize the results of our studies of Fpg protein from E. coli, elucidating the intrinsic mechanism of recognition and excision of damaged bases in DNA. Copyright (c) 2009 Elsevier B.V. All rights reserved.

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Year:  2009        PMID： 19751748     DOI： 10.1016/j.mrfmmm.2009.08.018

Source DB:  PubMed          Journal:  Mutat Res        ISSN： 0027-5107            Impact factor:   2.433


  22 in total

1.  Pre-steady-state kinetic and structural analysis of interaction of methionine γ-lyase from Citrobacter freundii with inhibitors.

Authors:  Nikita A Kuznetsov; Nicolai G Faleev; Alexandra A Kuznetsova; Elena A Morozova; Svetlana V Revtovich; Natalya V Anufrieva; Alexei D Nikulin; Olga S Fedorova; Tatyana V Demidkina
Journal:  J Biol Chem       Date:  2014-11-14       Impact factor: 5.157

Review 2.  DNA glycosylases search for and remove oxidized DNA bases.

Authors:  Susan S Wallace
Journal:  Environ Mol Mutagen       Date:  2013-10-07       Impact factor: 3.216

3.  Structural and biochemical analysis of DNA helix invasion by the bacterial 8-oxoguanine DNA glycosylase MutM.

Authors:  Rou-Jia Sung; Michael Zhang; Yan Qi; Gregory L Verdine
Journal:  J Biol Chem       Date:  2013-02-12       Impact factor: 5.157

4.  Two glycosylase families diffusively scan DNA using a wedge residue to probe for and identify oxidatively damaged bases.

Authors:  Shane R Nelson; Andrew R Dunn; Scott D Kathe; David M Warshaw; Susan S Wallace
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-05       Impact factor: 11.205

Review 5.  The Fpg/Nei family of DNA glycosylases: substrates, structures, and search for damage.

Authors:  Aishwarya Prakash; Sylvie Doublié; Susan S Wallace
Journal:  Prog Mol Biol Transl Sci       Date:  2012       Impact factor: 3.622

6.  Twist-open mechanism of DNA damage recognition by the Rad4/XPC nucleotide excision repair complex.

Authors:  Yogambigai Velmurugu; Xuejing Chen; Phillip Slogoff Sevilla; Jung-Hyun Min; Anjum Ansari
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-31       Impact factor: 11.205

7.  Visualizing the Search for Radiation-damaged DNA Bases in Real Time.

Authors:  Andrea J Lee; Susan S Wallace
Journal:  Radiat Phys Chem Oxf Engl 1993       Date:  2016-05-13       Impact factor: 2.858

8.  Single molecule glycosylase studies with engineered 8-oxoguanine DNA damage sites show functional defects of a MUTYH polyposis variant.

Authors:  Shane R Nelson; Scott D Kathe; Thomas S Hilzinger; April M Averill; David M Warshaw; Susan S Wallace; Andrea J Lee
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

9.  Conformational Dynamics of DNA Repair by Escherichia coli Endonuclease III.

Authors:  Nikita A Kuznetsov; Olga A Kladova; Alexandra A Kuznetsova; Alexander A Ishchenko; Murat K Saparbaev; Dmitry O Zharkov; Olga S Fedorova
Journal:  J Biol Chem       Date:  2015-04-13       Impact factor: 5.157

10.  Active destabilization of base pairs by a DNA glycosylase wedge initiates damage recognition.

Authors:  Nikita A Kuznetsov; Christina Bergonzo; Arthur J Campbell; Haoquan Li; Grigory V Mechetin; Carlos de los Santos; Arthur P Grollman; Olga S Fedorova; Dmitry O Zharkov; Carlos Simmerling
Journal:  Nucleic Acids Res       Date:  2014-12-17       Impact factor: 16.971
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