Literature DB >> 197494

A method for the isolation of cross-linked nucleosides from DNA: application to cross-links induced by nitrous acid.

S Dubelman, R Shapiro.   

Abstract

A procedure is reported for the isolation of cross-linked nucleosides from nitrous acid-treated calf thymus DNA. Cross-linked DNA was hydrolyzed enzymatically with deoxyribonuclease I and snake venom phosphodiesterase and fractionated on a DEAE-Sephadex column. After desalting, the fractions were characterized by ultraviolet spectroscopy, anion exchange high pressure liquid chromatography, gel filtration, and two dimensional thin layer chromatography. A cross-linked dinucleotide, and a series of oligonucleotides were isolated. The oligomers, which had resisted digestion by the above enzyme system, were digested to the nucleoside level by a spleen phosphodiesterase-alkaline phosphatase combination. A second cross-linked product was isolated from this mixture. The cross-linked nucleosides were less than 0.17% of the total nucleotides of the DNA. The methods developed here are recommended for the isolation of products from DNA treated with other cross-linking agents.

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Year:  1977        PMID: 197494      PMCID: PMC342524          DOI: 10.1093/nar/4.6.1815

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  31 in total

1.  CROSSLINKING OF DNA BY ENZYMATICALLY OR CHEMICALLY ACTIVATED MITOMYCINS AND PORFIROMYCINS, BIFUNCTIONALLY "ALKYLATING" ANTIBIOTICS.

Authors:  W SZYBALSKI; V N IYER
Journal:  Fed Proc       Date:  1964 Sep-Oct

2.  CHROMATOGRAPHY OF MIXED OLIGONUCLEOTIDES ON DEAE-SEPHADEX.

Authors:  G W RUSHIZKY; E M BARTOS; H A SOBER
Journal:  Biochemistry       Date:  1964-05       Impact factor: 3.162

3.  STRUCTURE AND FUNCTION OF CROSS-LINKED DNA. I. REVERSIBLE DENATURATION AND BACILLUS SUBTILIS TRANSFORMATION.

Authors:  E F BECKER; B K ZIMMERMAN; E P GEIDUSCHEK
Journal:  J Mol Biol       Date:  1964-03       Impact factor: 5.469

4.  [The method of reaction of desoxyribonucleic acid with nitrous acid].

Authors:  H SCHUSTER
Journal:  Z Naturforsch B       Date:  1960-05       Impact factor: 1.047

5.  "Reversible" DNA.

Authors:  E P GEIDUSCHEK
Journal:  Proc Natl Acad Sci U S A       Date:  1961-07-15       Impact factor: 11.205

6.  [Method of chemical determination of the biologically active unit of ribonucleic acid in tobacco mosaic virus].

Authors:  H SCHUSTER; G SCHRAMM
Journal:  Z Naturforsch B       Date:  1958-11       Impact factor: 1.047

7.  The reaction of mono- and di-functional alkylating agents with nucleic acids.

Authors:  P Brookes; P D Lawley
Journal:  Biochem J       Date:  1961-09       Impact factor: 3.857

8.  Desalting of mono- and oligonucleotides.

Authors:  G W RUSHIZKY; H A SOBER
Journal:  Biochim Biophys Acta       Date:  1962-01-22

9.  Characterization of a naturally occurring, cross-linked fraction of DNA. II. Origin of the cross-linkage.

Authors:  B M Alberts
Journal:  J Mol Biol       Date:  1968-03-14       Impact factor: 5.469

10.  Isolation and identification of cross-linked nucleosides from nitrous acid treated deoxyribonucleic acid.

Authors:  R Shapiro; S Dubelman; A M Feinberg; P F Crain; J A McCloskey
Journal:  J Am Chem Soc       Date:  1977-01-05       Impact factor: 15.419

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  5 in total

1.  Formation of N-N cross-links in DNA by reaction of radiation-produced DNA base pair diradicals: a DFT study.

Authors:  Venkata Pottiboyina; Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2011-11-29       Impact factor: 2.991

2.  Toxicokinetics and molecular interaction of [14C]-formaldehyde in rats.

Authors:  R K Upreti; M Y Farooqui; A E Ahmed; G A Ansari
Journal:  Arch Environ Contam Toxicol       Date:  1987-05       Impact factor: 2.804

3.  Nitrous acid damage to duplex deoxyribonucleic acid: distinction between deamination of cytosine residues and a novel mutational lesion.

Authors:  A D Frankel; B K Duncan; P E Hartman
Journal:  J Bacteriol       Date:  1980-04       Impact factor: 3.490

4.  Interaction of mutagenic spermidine-nitrous acid reaction products with uvr- and recA-dependent repair systems in Salmonella.

Authors:  M Murphey-Corb; H L Kong; M L Murray
Journal:  J Bacteriol       Date:  1980-04       Impact factor: 3.490

Review 5.  Formation and repair of unavoidable, endogenous interstrand cross-links in cellular DNA.

Authors:  Kurt Housh; Jay S Jha; Tuhin Haldar; Saosan Binth Md Amin; Tanhaul Islam; Amanda Wallace; Anuoluwapo Gomina; Xu Guo; Christopher Nel; Jesse W Wyatt; Kent S Gates
Journal:  DNA Repair (Amst)       Date:  2020-12-24
  5 in total

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