Literature DB >> 19747990

The gamma class of carbonic anhydrases.

James G Ferry1.   

Abstract

Homologs of the gamma class of carbonic anhydrases, one of five independently evolved classes, are found in the genomic sequences of diverse species from all three domains of life. The archetype (Cam) from the Archaea domain is a homotrimer of which the crystal structure reveals monomers with a distinctive left-handed parallel beta-helix fold. Histidines from adjacent monomers ligate the three active site metals surrounded by residues in a hydrogen bond network essential for activity. Cam is most active with iron, the physiologically relevant metal. Although the active site residues bear little resemblance to the other classes, kinetic analyses indicate a two-step mechanism analogous to all carbonic anhydrases investigated. Phylogenetic analyses of Cam homologs derived from the databases show that Cam is representative of a minor subclass with the great majority belonging to a subclass (CamH) with significant differences in active site residues and apparent mechanism from Cam. A physiological function for any of the Cam and CamH homologs is unknown, although roles in transport of carbon dioxide and bicarbonate across membranes has been proposed. Copyright 2009 Elsevier B.V. All rights reserved.

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Year:  2009        PMID: 19747990      PMCID: PMC2818130          DOI: 10.1016/j.bbapap.2009.08.026

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  43 in total

1.  Carbonic anhydrase is an ancient enzyme widespread in prokaryotes.

Authors:  K S Smith; C Jakubzick; T S Whittam; J G Ferry
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

2.  Crystal structure of the "cab"-type beta class carbonic anhydrase from the archaeon Methanobacterium thermoautotrophicum.

Authors:  P Strop; K S Smith; T M Iverson; J G Ferry; D C Rees
Journal:  J Biol Chem       Date:  2000-11-28       Impact factor: 5.157

Review 3.  Carbonic anhydrase: new insights for an ancient enzyme.

Authors:  B C Tripp; K Smith; J G Ferry
Journal:  J Biol Chem       Date:  2001-11-05       Impact factor: 5.157

4.  The active site architecture of Pisum sativum beta-carbonic anhydrase is a mirror image of that of alpha-carbonic anhydrases.

Authors:  M S Kimber; E F Pai
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

5.  Bicarbonate as a proton donor in catalysis by Zn(II)- and Co(II)-containing carbonic anhydrases.

Authors:  C Tu; B C Tripp; J G Ferry; D N Silverman
Journal:  J Am Chem Soc       Date:  2001-06-27       Impact factor: 15.419

Review 6.  Prokaryotic carbonic anhydrases.

Authors:  K S Smith; J G Ferry
Journal:  FEMS Microbiol Rev       Date:  2000-10       Impact factor: 16.408

7.  The extracellular component of a transport metabolon. Extracellular loop 4 of the human AE1 Cl-/HCO3- exchanger binds carbonic anhydrase IV.

Authors:  Deborah Sterling; Bernardo V Alvarez; Joseph R Casey
Journal:  J Biol Chem       Date:  2002-05-06       Impact factor: 5.157

8.  A closer look at the active site of gamma-class carbonic anhydrases: high-resolution crystallographic studies of the carbonic anhydrase from Methanosarcina thermophila.

Authors:  T M Iverson; B E Alber; C Kisker; J G Ferry; D C Rees
Journal:  Biochemistry       Date:  2000-08-08       Impact factor: 3.162

9.  A structure-function study of a proton transport pathway in the gamma-class carbonic anhydrase from Methanosarcina thermophila.

Authors:  B C Tripp; J G Ferry
Journal:  Biochemistry       Date:  2000-08-08       Impact factor: 3.162

10.  Structural and kinetic characterization of an archaeal beta-class carbonic anhydrase.

Authors:  K S Smith; N J Cosper; C Stalhandske; R A Scott; J G Ferry
Journal:  J Bacteriol       Date:  2000-12       Impact factor: 3.490

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  36 in total

Review 1.  Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation.

Authors:  Aaron M Appel; John E Bercaw; Andrew B Bocarsly; Holger Dobbek; Daniel L DuBois; Michel Dupuis; James G Ferry; Etsuko Fujita; Russ Hille; Paul J A Kenis; Cheryl A Kerfeld; Robert H Morris; Charles H F Peden; Archie R Portis; Stephen W Ragsdale; Thomas B Rauchfuss; Joost N H Reek; Lance C Seefeldt; Rudolf K Thauer; Grover L Waldrop
Journal:  Chem Rev       Date:  2013-06-14       Impact factor: 60.622

2.  The complete genome of a cyanobacterium from a soda lake reveals the presence of the components of CO2-concentrating mechanism.

Authors:  Elena V Kupriyanova; Sung Mi Cho; Youn-Il Park; Natalia A Pronina; Dmitry A Los
Journal:  Photosynth Res       Date:  2016-02-23       Impact factor: 3.573

3.  Serum Carbonic Anhydrase 1 is a Biomarker for Diagnosis of Human Schistosoma mansoni Infection.

Authors:  Manal Ibrahim Kardoush; Brian J Ward; Momar Ndao
Journal:  Am J Trop Med Hyg       Date:  2017-04       Impact factor: 2.345

4.  Bioinformatic analysis of beta carbonic anhydrase sequences from protozoans and metazoans.

Authors:  Reza Zolfaghari Emameh; Harlan Barker; Martti E E Tolvanen; Csaba Ortutay; Seppo Parkkila
Journal:  Parasit Vectors       Date:  2014-01-21       Impact factor: 3.876

5.  Molecular cloning and transcriptional regulation of two γ-carbonic anhydrase genes in the green macroalga Ulva prolifera.

Authors:  Yu Wang; Feng Liu; Manman Liu; Shitao Shi; Yuping Bi; Nansheng Chen
Journal:  Genetica       Date:  2021-01-15       Impact factor: 1.082

6.  The γ-carbonic anhydrase subcomplex of mitochondrial complex I is essential for development and important for photomorphogenesis of Arabidopsis.

Authors:  Qin Wang; Rikard Fristedt; Xuhong Yu; Zugen Chen; Hongtao Liu; Yurhee Lee; Hongwei Guo; Sabeeha S Merchant; Chentao Lin
Journal:  Plant Physiol       Date:  2012-09-18       Impact factor: 8.340

7.  Molecular structure of the Brucella abortus metalloprotein RicA, a Rab2-binding virulence effector.

Authors:  Julien Herrou; Sean Crosson
Journal:  Biochemistry       Date:  2013-11-22       Impact factor: 3.162

8.  Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers.

Authors:  Melina Kerou; Pierre Offre; Luis Valledor; Sophie S Abby; Michael Melcher; Matthias Nagler; Wolfram Weckwerth; Christa Schleper
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-18       Impact factor: 11.205

9.  Evidence for an early evolutionary emergence of gamma-type carbonic anhydrases as components of mitochondrial respiratory complex I.

Authors:  Ryan M R Gawryluk; Michael W Gray
Journal:  BMC Evol Biol       Date:  2010-06-14       Impact factor: 3.260

10.  Carbonic anhydrase modification for carbon management.

Authors:  Anand Giri; Deepak Pant
Journal:  Environ Sci Pollut Res Int       Date:  2019-12-03       Impact factor: 4.223

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