Literature DB >> 19744879

Novel biological insights through metabolomics and 13C-flux analysis.

Nicola Zamboni1, Uwe Sauer.   

Abstract

Metabolomics and (13)C-flux analysis have become instrumental for analyzing cellular metabolism and its regulation. Driven primarily by technical advances in mass spectrometry-based analytics, they provide unmatched readouts on metabolic state and activity. Functional genomics leverages metabolomics for the discovery of novel enzymes and unexpected secondary activities of annotated enzymes. (13)C-flux analyses are frequently used for empirical elucidation of pathways in poorly characterized species and for network-wide analysis of mechanisms that realize energy and redox balancing. Integration of metabolomics, (13)C-flux analysis and other data enable the condition-dependent characterization of regulatory circuits that ultimately govern the metabolic phenotype.

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Year:  2009        PMID: 19744879     DOI: 10.1016/j.mib.2009.08.003

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  42 in total

1.  Metabolic pathway confirmation and discovery through (13)C-labeling of proteinogenic amino acids.

Authors:  Le You; Lawrence Page; Xueyang Feng; Bert Berla; Himadri B Pakrasi; Yinjie J Tang
Journal:  J Vis Exp       Date:  2012-01-26       Impact factor: 1.355

2.  Metabolic programming a lean phenotype by deregulation of RNA polymerase III.

Authors:  Ian M Willis; Robyn D Moir; Nouria Hernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-14       Impact factor: 11.205

Review 3.  Analysis of bacterial biofilms using NMR-based metabolomics.

Authors:  Bo Zhang; Robert Powers
Journal:  Future Med Chem       Date:  2012-06       Impact factor: 3.808

4.  Central carbon metabolism in Mycobacterium tuberculosis: an unexpected frontier.

Authors:  Kyu Y Rhee; Luiz Pedro Sorio de Carvalho; Ruslana Bryk; Sabine Ehrt; Joeli Marrero; Sae Woong Park; Dirk Schnappinger; Aditya Venugopal; Carl Nathan
Journal:  Trends Microbiol       Date:  2011-05-10       Impact factor: 17.079

5.  13C-flux analysis reveals NADPH-balancing transhydrogenation cycles in stationary phase of nitrogen-starving Bacillus subtilis.

Authors:  Martin Rühl; Dominique Le Coq; Stéphane Aymerich; Uwe Sauer
Journal:  J Biol Chem       Date:  2012-06-27       Impact factor: 5.157

Review 6.  The importance of accurately correcting for the natural abundance of stable isotopes.

Authors:  Firas S Midani; Michelle L Wynn; Santiago Schnell
Journal:  Anal Biochem       Date:  2017-01-11       Impact factor: 3.365

Review 7.  Recent advances in mapping environmental microbial metabolisms through 13C isotopic fingerprints.

Authors:  Joseph Kuo-Hsiang Tang; Le You; Robert E Blankenship; Yinjie J Tang
Journal:  J R Soc Interface       Date:  2012-08-15       Impact factor: 4.118

Review 8.  Unpredictability of metabolism--the key role of metabolomics science in combination with next-generation genome sequencing.

Authors:  Wolfram Weckwerth
Journal:  Anal Bioanal Chem       Date:  2011-05-10       Impact factor: 4.142

9.  Carbon metabolism of enterobacterial human pathogens growing in epithelial colorectal adenocarcinoma (Caco-2) cells.

Authors:  Andreas Götz; Eva Eylert; Wolfgang Eisenreich; Werner Goebel
Journal:  PLoS One       Date:  2010-05-11       Impact factor: 3.240

10.  Optimization of cold methanol quenching for quantitative metabolomics of Penicillium chrysogenum.

Authors:  Lodewijk P de Jonge; Rutger D Douma; Joseph J Heijnen; Walter M van Gulik
Journal:  Metabolomics       Date:  2011-10-07       Impact factor: 4.290

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