Literature DB >> 19743419

Proteopathogen, a protein database for studying Candida albicans--host interaction.

Vital Vialás1, Rubén Nogales-Cadenas, César Nombela, Alberto Pascual-Montano, Concha Gil.   

Abstract

There exist, at present, public web repositories for management and storage of proteomic data and also fungi-specific databases. None of them, however, is focused to the specific research area of fungal pathogens and their interactions with the host, and contains proteomics experimental data. In this context, we present Proteopathogen, a database intended to compile proteomics experimental data and to facilitate storage and access to a range of data which spans proteomics workflows from description of the experimental approaches leading to sample preparation to MS settings and peptides supporting protein identification. Proteopathogen is currently focused on Candida albicans and its interaction with macrophages; however, data from experiments concerning different pathogenic fungi species and other mammalian cells may also be found suitable for inclusion into the database. Proteopathogen is publicly available at http://proteopathogen.dacya.ucm.es.

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Year:  2009        PMID: 19743419     DOI: 10.1002/pmic.200900023

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  9 in total

1.  PHILM2Web: A high-throughput database of macromolecular host-pathogen interactions on the Web.

Authors:  Tuan-Dung Le; Phuong D Nguyen; Dmitry Korkin; Thanh Thieu
Journal:  Database (Oxford)       Date:  2022-06-30       Impact factor: 4.462

2.  Interface-Based Structural Prediction of Novel Host-Pathogen Interactions.

Authors:  Emine Guven-Maiorov; Chung-Jung Tsai; Buyong Ma; Ruth Nussinov
Journal:  Methods Mol Biol       Date:  2019

Review 3.  Dissecting Candida albicans Infection from the Perspective of C. albicans Virulence and Omics Approaches on Host-Pathogen Interaction: A Review.

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Journal:  Int J Mol Sci       Date:  2016-10-18       Impact factor: 5.923

Review 4.  Challenges and Strategies for Proteome Analysis of the Interaction of Human Pathogenic Fungi with Host Immune Cells.

Authors:  Thomas Krüger; Ting Luo; Hella Schmidt; Iordana Shopova; Olaf Kniemeyer
Journal:  Proteomes       Date:  2015-12-14

5.  A Candida albicans PeptideAtlas.

Authors:  Vital Vialas; Zhi Sun; Carla Verónica Loureiro y Penha; Montserrat Carrascal; Joaquín Abián; Lucía Monteoliva; Eric W Deutsch; Ruedi Aebersold; Robert L Moritz; Concha Gil
Journal:  J Proteomics       Date:  2013-06-26       Impact factor: 4.044

6.  HoPaCI-DB: host-Pseudomonas and Coxiella interaction database.

Authors:  Sophie Bleves; Irmtraud Dunger; Mathias C Walter; Dimitrios Frangoulidis; Gabi Kastenmüller; Romé Voulhoux; Andreas Ruepp
Journal:  Nucleic Acids Res       Date:  2013-10-16       Impact factor: 16.971

Review 7.  A review on computational systems biology of pathogen-host interactions.

Authors:  Saliha Durmuş; Tunahan Çakır; Arzucan Özgür; Reinhard Guthke
Journal:  Front Microbiol       Date:  2015-04-09       Impact factor: 5.640

8.  HPIDB 2.0: a curated database for host-pathogen interactions.

Authors:  Mais G Ammari; Cathy R Gresham; Fiona M McCarthy; Bindu Nanduri
Journal:  Database (Oxford)       Date:  2016-07-03       Impact factor: 3.451

Review 9.  Structural host-microbiota interaction networks.

Authors:  Emine Guven-Maiorov; Chung-Jung Tsai; Ruth Nussinov
Journal:  PLoS Comput Biol       Date:  2017-10-12       Impact factor: 4.475

  9 in total

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