Literature DB >> 19741685

Prepublication data sharing.

Ewan Birney, Thomas J Hudson, Eric D Green, Chris Gunter, Sean Eddy, Jane Rogers, Jennifer R Harris, S Dusko Ehrlich, Rolf Apweiler, Christopher P Austin, Lisa Berglund, Martin Bobrow, Chas Bountra, Anthony J Brookes, Anne Cambon-Thomsen, Nigel P Carter, Rex L Chisholm, Jorge L Contreras, Robert M Cooke, William L Crosby, Ken Dewar, Richard Durbin, Stephanie O M Dyke, Joseph R Ecker, Khaled El Emam, Lars Feuk, Stacey B Gabriel, John Gallacher, William M Gelbart, Antoni Granell, Francisco Guarner, Tim Hubbard, Scott A Jackson, Jennifer L Jennings, Yann Joly, Steven M Jones, Jane Kaye, Karen L Kennedy, Bartha Maria Knoppers, Nikos C Kyrpides, William W Lowrance, Jingchu Luo, John J MacKay, Luis Martín-Rivera, W Richard McCombie, John D McPherson, Linda Miller, Webb Miller, Don Moerman, Vincent Mooser, Cynthia C Morton, James M Ostell, B F Francis Ouellette, Julian Parkhill, Parminder S Raina, Christopher Rawlings, Steven E Scherer, Stephen W Scherer, Paul N Schofield, Christoph W Sensen, Victoria C Stodden, Michael R Sussman, Toshihiro Tanaka, Janet Thornton, Tatsuhiko Tsunoda, David Valle, Eero I Vuorio, Neil M Walker, Susan Wallace, George Weinstock, William B Whitman, Kim C Worley, Cathy Wu, Jiayan Wu, Jun Yu.   

Abstract

Rapid release of prepublication data has served the field of genomics well. Attendees at a workshop in Toronto recommend extending the practice to other biological data sets.

Entities:  

Mesh:

Year:  2009        PMID: 19741685      PMCID: PMC3073843          DOI: 10.1038/461168a

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  6 in total

1.  Initial sequencing and analysis of the human genome.

Authors:  E S Lander; L M Linton; B Birren; C Nusbaum; M C Zody; J Baldwin; K Devon; K Dewar; M Doyle; W FitzHugh; R Funke; D Gage; K Harris; A Heaford; J Howland; L Kann; J Lehoczky; R LeVine; P McEwan; K McKernan; J Meldrim; J P Mesirov; C Miranda; W Morris; J Naylor; C Raymond; M Rosetti; R Santos; A Sheridan; C Sougnez; Y Stange-Thomann; N Stojanovic; A Subramanian; D Wyman; J Rogers; J Sulston; R Ainscough; S Beck; D Bentley; J Burton; C Clee; N Carter; A Coulson; R Deadman; P Deloukas; A Dunham; I Dunham; R Durbin; L French; D Grafham; S Gregory; T Hubbard; S Humphray; A Hunt; M Jones; C Lloyd; A McMurray; L Matthews; S Mercer; S Milne; J C Mullikin; A Mungall; R Plumb; M Ross; R Shownkeen; S Sims; R H Waterston; R K Wilson; L W Hillier; J D McPherson; M A Marra; E R Mardis; L A Fulton; A T Chinwalla; K H Pepin; W R Gish; S L Chissoe; M C Wendl; K D Delehaunty; T L Miner; A Delehaunty; J B Kramer; L L Cook; R S Fulton; D L Johnson; P J Minx; S W Clifton; T Hawkins; E Branscomb; P Predki; P Richardson; S Wenning; T Slezak; N Doggett; J F Cheng; A Olsen; S Lucas; C Elkin; E Uberbacher; M Frazier; R A Gibbs; D M Muzny; S E Scherer; J B Bouck; E J Sodergren; K C Worley; C M Rives; J H Gorrell; M L Metzker; S L Naylor; R S Kucherlapati; D L Nelson; G M Weinstock; Y Sakaki; A Fujiyama; M Hattori; T Yada; A Toyoda; T Itoh; C Kawagoe; H Watanabe; Y Totoki; T Taylor; J Weissenbach; R Heilig; W Saurin; F Artiguenave; P Brottier; T Bruls; E Pelletier; C Robert; P Wincker; D R Smith; L Doucette-Stamm; M Rubenfield; K Weinstock; H M Lee; J Dubois; A Rosenthal; M Platzer; G Nyakatura; S Taudien; A Rump; H Yang; J Yu; J Wang; G Huang; J Gu; L Hood; L Rowen; A Madan; S Qin; R W Davis; N A Federspiel; A P Abola; M J Proctor; R M Myers; J Schmutz; M Dickson; J Grimwood; D R Cox; M V Olson; R Kaul; C Raymond; N Shimizu; K Kawasaki; S Minoshima; G A Evans; M Athanasiou; R Schultz; B A Roe; F Chen; H Pan; J Ramser; H Lehrach; R Reinhardt; W R McCombie; M de la Bastide; N Dedhia; H Blöcker; K Hornischer; G Nordsiek; R Agarwala; L Aravind; J A Bailey; A Bateman; S Batzoglou; E Birney; P Bork; D G Brown; C B Burge; L Cerutti; H C Chen; D Church; M Clamp; R R Copley; T Doerks; S R Eddy; E E Eichler; T S Furey; J Galagan; J G Gilbert; C Harmon; Y Hayashizaki; D Haussler; H Hermjakob; K Hokamp; W Jang; L S Johnson; T A Jones; S Kasif; A Kaspryzk; S Kennedy; W J Kent; P Kitts; E V Koonin; I Korf; D Kulp; D Lancet; T M Lowe; A McLysaght; T Mikkelsen; J V Moran; N Mulder; V J Pollara; C P Ponting; G Schuler; J Schultz; G Slater; A F Smit; E Stupka; J Szustakowki; D Thierry-Mieg; J Thierry-Mieg; L Wagner; J Wallis; R Wheeler; A Williams; Y I Wolf; K H Wolfe; S P Yang; R F Yeh; F Collins; M S Guyer; J Peterson; A Felsenfeld; K A Wetterstrand; A Patrinos; M J Morgan; P de Jong; J J Catanese; K Osoegawa; H Shizuya; S Choi; Y J Chen; J Szustakowki
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

2.  Sharing publication-related data and materials: responsibilities of authorship in the life sciences.

Authors:  Thomas R Cech; Sean R Eddy; David Eisenberg; Karen Hersey; Steven H Holtzman; George H Poste; Natasha V Raikhel; Richard H Scheller; David B Singer; Mary C Waltham
Journal:  Plant Physiol       Date:  2003-05       Impact factor: 8.340

3.  Credit where credit is overdue.

Authors: 
Journal:  Nat Biotechnol       Date:  2009-07       Impact factor: 54.908

4.  Statement on the rapid release of genomic DNA sequence.

Authors:  M Guyer
Journal:  Genome Res       Date:  1998-05       Impact factor: 9.043

5.  Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles.

Authors:  Henry Rodriguez; Mike Snyder; Mathias Uhlén; Phil Andrews; Ronald Beavis; Christoph Borchers; Robert J Chalkley; Sang Yun Cho; Katie Cottingham; Michael Dunn; Tomasz Dylag; Ron Edgar; Peter Hare; Albert J R Heck; Roland F Hirsch; Karen Kennedy; Patrik Kolar; Hans-Joachim Kraus; Parag Mallick; Alexey Nesvizhskii; Peipei Ping; Fredrik Pontén; Liming Yang; John R Yates; Stephen E Stein; Henning Hermjakob; Christopher R Kinsinger; Rolf Apweiler
Journal:  J Proteome Res       Date:  2009-07       Impact factor: 4.466

Review 6.  Data sharing in genomics--re-shaping scientific practice.

Authors:  Jane Kaye; Catherine Heeney; Naomi Hawkins; Jantina de Vries; Paula Boddington
Journal:  Nat Rev Genet       Date:  2009-05       Impact factor: 53.242

  6 in total
  121 in total

Review 1.  The tension between data sharing and the protection of privacy in genomics research.

Authors:  Jane Kaye
Journal:  Annu Rev Genomics Hum Genet       Date:  2012-03-09       Impact factor: 8.929

2.  Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

Authors:  John A St John; Edward L Braun; Sally R Isberg; Lee G Miles; Amanda Y Chong; Jaime Gongora; Pauline Dalzell; Christopher Moran; Bertrand Bed'hom; Arkhat Abzhanov; Shane C Burgess; Amanda M Cooksey; Todd A Castoe; Nicholas G Crawford; Llewellyn D Densmore; Jennifer C Drew; Scott V Edwards; Brant C Faircloth; Matthew K Fujita; Matthew J Greenwold; Federico G Hoffmann; Jonathan M Howard; Taisen Iguchi; Daniel E Janes; Shahid Yar Khan; Satomi Kohno; Ap Jason de Koning; Stacey L Lance; Fiona M McCarthy; John E McCormack; Mark E Merchant; Daniel G Peterson; David D Pollock; Nader Pourmand; Brian J Raney; Kyria A Roessler; Jeremy R Sanford; Roger H Sawyer; Carl J Schmidt; Eric W Triplett; Tracey D Tuberville; Miryam Venegas-Anaya; Jason T Howard; Erich D Jarvis; Louis J Guillette; Travis C Glenn; Richard E Green; David A Ray
Journal:  Genome Biol       Date:  2012-01-31       Impact factor: 13.583

3.  Research priorities. Shining light into black boxes.

Authors:  A Morin; J Urban; P D Adams; I Foster; A Sali; D Baker; P Sliz
Journal:  Science       Date:  2012-04-13       Impact factor: 47.728

4.  Open biotechnology: licenses needed.

Authors:  Yann Joly
Journal:  Nat Biotechnol       Date:  2010-05       Impact factor: 54.908

5.  Consent to 'personal' genomics and privacy. Direct-to-consumer genetic tests and population genome research challenge traditional notions of privacy and consent.

Authors:  Bartha Maria Knoppers
Journal:  EMBO Rep       Date:  2010-05-07       Impact factor: 8.807

6.  PhysiomeSpace: digital library service for biomedical data.

Authors:  Debora Testi; Paolo Quadrani; Marco Viceconti
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2010-06-28       Impact factor: 4.226

7.  Pig genome sequence--analysis and publication strategy.

Authors:  Alan L Archibald; Lars Bolund; Carol Churcher; Merete Fredholm; Martien A M Groenen; Barbara Harlizius; Kyung-Tai Lee; Denis Milan; Jane Rogers; Max F Rothschild; Hirohide Uenishi; Jun Wang; Lawrence B Schook
Journal:  BMC Genomics       Date:  2010-07-19       Impact factor: 3.969

8.  The Bermuda Triangle: The Pragmatics, Policies, and Principles for Data Sharing in the History of the Human Genome Project.

Authors:  Kathryn Maxson Jones; Rachel A Ankeny; Robert Cook-Deegan
Journal:  J Hist Biol       Date:  2018-12       Impact factor: 1.326

9.  Precompetitive consortia in biomedicine--how are we doing?

Authors:  Barbara Mittleman; Garry Neil; Joel Cutcher-Gershenfeld
Journal:  Nat Biotechnol       Date:  2013-11       Impact factor: 54.908

10.  Data producers deserve citation credit.

Authors: 
Journal:  Nat Genet       Date:  2009-10       Impact factor: 38.330

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