Literature DB >> 19739392

Likelihood ridges and multimodality in population growth rate models.

Leo Polansky1, Perry de Valpine, James O Lloyd-Smith, Wayne M Getz.   

Abstract

A central problem in population ecology is to use time series data to estimate the form of density dependence in the per capita growth rate (pgr). This is often accomplished with phenomenological models such as the theta-Ricker or generalized Beverton-Holt. Using the theta-Ricker model as a simple but flexible description of density dependence, we apply theory and simulations to show how multimodality and ridges in the likelihood surface can emerge even in the absence of model misspecification or observation error. The message for model fitting of real data is to consider the likelihood surface in detail, check whether the best-fit model is located on a likelihood ridge and, if so, evaluate predictive differences of biologically plausible models along the ridge. We present a detailed analysis of a focal data set showing how multimodality and ridges emerge in practice for fits of several parametric models, including a state-space model with explicit accommodation of observation error. Best-fit models for these data are biologically dubious beyond the range of the data, and likelihood ratio confidence regions include a wide range of more biologically plausible models. We demonstrate the broad relevance of these findings by presenting analyses of 25 additional data sets spanning a wide range of taxa. The results here are relevant to information-theoretic and Bayesian methods, which also rely on likelihoods. Beyond presentation of best-fit models and confidence regions around individual parameters, effort toward understanding features of the likelihood surface will help ensure the most robust translation from statistical analysis to biological interpretation.

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Year:  2009        PMID: 19739392     DOI: 10.1890/08-1461.1

Source DB:  PubMed          Journal:  Ecology        ISSN: 0012-9658            Impact factor:   5.499


  11 in total

1.  Model-free forecasting outperforms the correct mechanistic model for simulated and experimental data.

Authors:  Charles T Perretti; Stephan B Munch; George Sugihara
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-25       Impact factor: 11.205

2.  Ecological change points: The strength of density dependence and the loss of history.

Authors:  José M Ponciano; Mark L Taper; Brian Dennis
Journal:  Theor Popul Biol       Date:  2018-04-26       Impact factor: 1.570

3.  Observations on Neotricula aperta (Gastropoda: Pomatiopsidae) population densities in Thailand and central Laos: implications for the spread of Mekong schistosomiasis.

Authors:  Stephen W Attwood; E Suchart Upatham
Journal:  Parasit Vectors       Date:  2012-06-21       Impact factor: 3.876

4.  Spatial climate patterns explain negligible variation in strength of compensatory density feedbacks in birds and mammals.

Authors:  Salvador Herrando-Pérez; Steven Delean; Barry W Brook; Phillip Cassey; Corey J A Bradshaw
Journal:  PLoS One       Date:  2014-03-11       Impact factor: 3.240

5.  Quantifying extinction probabilities from sighting records: inference and uncertainties.

Authors:  Peter Caley; Simon C Barry
Journal:  PLoS One       Date:  2014-04-30       Impact factor: 3.240

6.  Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape.

Authors:  David R J Pleydell; Samuel Soubeyrand; Sylvie Dallot; Gérard Labonne; Joël Chadœuf; Emmanuel Jacquot; Gaël Thébaud
Journal:  PLoS Comput Biol       Date:  2018-04-30       Impact factor: 4.475

7.  Strength of density feedback in census data increases from slow to fast life histories.

Authors:  Salvador Herrando-Pérez; Steven Delean; Barry W Brook; Corey J A Bradshaw
Journal:  Ecol Evol       Date:  2012-07-12       Impact factor: 2.912

8.  A population growth trend analysis for Neotricula aperta, the snail intermediate host of Schistosoma mekongi, after construction of the Pak-Mun dam.

Authors:  Stephen W Attwood; E Suchart Upatham
Journal:  PLoS Negl Trop Dis       Date:  2013-11-07

9.  State-space models' dirty little secrets: even simple linear Gaussian models can have estimation problems.

Authors:  Marie Auger-Méthé; Chris Field; Christoffer M Albertsen; Andrew E Derocher; Mark A Lewis; Ian D Jonsen; Joanna Mills Flemming
Journal:  Sci Rep       Date:  2016-05-25       Impact factor: 4.379

10.  Elk population dynamics when carrying capacities vary within and among herds.

Authors:  Lisa J Koetke; Adam Duarte; Floyd W Weckerly
Journal:  Sci Rep       Date:  2020-09-29       Impact factor: 4.379

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