Literature DB >> 19737020

A replicable tetrahedral nanostructure self-assembled from a single DNA strand.

Zhe Li1, Bryan Wei, Jeanette Nangreave, Chenxiang Lin, Yan Liu, Yongli Mi, Hao Yan.   

Abstract

We report the design and construction of a nanometer-sized tetrahedron from a single strand of DNA that is 286 nucleotides long. The formation of the tetrahedron was verified by restriction enzyme digestion, Ferguson analysis, and atomic force microscopy (AFM) imaging. We further demonstrate that synthesis of the tetrahedron can be easily scaled up through in vivo replication using standard molecular cloning techniques. We found that the in vivo replication efficiency of the tetrahedron is significantly higher in comparison to in vitro replication using rolling-circle amplification (RCA). Our results suggest that it is now possible to design and replicate increasingly complex, single-stranded DNA nanostructures in vivo.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19737020      PMCID: PMC3083857          DOI: 10.1021/ja903768f

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

1.  DNA-templated self-assembly of protein and nanoparticle linear arrays.

Authors:  Hanying Li; Sung Ha Park; John H Reif; Thomas H LaBean; Hao Yan
Journal:  J Am Chem Soc       Date:  2004-01-21       Impact factor: 15.419

Review 2.  DNA in a material world.

Authors:  Nadrian C Seeman
Journal:  Nature       Date:  2003-01-23       Impact factor: 49.962

3.  The single-step synthesis of a DNA tetrahedron.

Authors:  Russell P Goodman; Richard M Berry; Andrew J Turberfield
Journal:  Chem Commun (Camb)       Date:  2004-05-20       Impact factor: 6.222

4.  Pseudohexagonal 2D DNA crystals from double crossover cohesion.

Authors:  Baoquan Ding; Ruojie Sha; Nadrian C Seeman
Journal:  J Am Chem Soc       Date:  2004-08-25       Impact factor: 15.419

5.  Tensegrity: construction of rigid DNA triangles with flexible four-arm DNA junctions.

Authors:  Dage Liu; Mingsheng Wang; Zhaoxiang Deng; Richard Walulu; Chengde Mao
Journal:  J Am Chem Soc       Date:  2004-03-03       Impact factor: 15.419

6.  Synthesis from DNA of a molecule with the connectivity of a cube.

Authors:  J H Chen; N C Seeman
Journal:  Nature       Date:  1991-04-18       Impact factor: 49.962

7.  DNA triangles and self-assembled hexagonal tilings.

Authors:  Nickolas Chelyapov; Yuriy Brun; Manoj Gopalkrishnan; Dustin Reishus; Bilal Shaw; Leonard Adleman
Journal:  J Am Chem Soc       Date:  2004-11-03       Impact factor: 15.419

8.  A DNA-based method for rationally assembling nanoparticles into macroscopic materials.

Authors:  C A Mirkin; R L Letsinger; R C Mucic; J J Storhoff
Journal:  Nature       Date:  1996-08-15       Impact factor: 49.962

9.  A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron.

Authors:  William M Shih; Joel D Quispe; Gerald F Joyce
Journal:  Nature       Date:  2004-02-12       Impact factor: 49.962

10.  Pyramidal and chiral groupings of gold nanocrystals assembled using DNA scaffolds.

Authors:  Alexander J Mastroianni; Shelley A Claridge; A Paul Alivisatos
Journal:  J Am Chem Soc       Date:  2009-06-24       Impact factor: 15.419

View more
  14 in total

Review 1.  Knitting complex weaves with DNA origami.

Authors:  William M Shih; Chenxiang Lin
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

2.  Nucleic acid-based nanoengineering: novel structures for biomedical applications.

Authors:  Hanying Li; Thomas H Labean; Kam W Leong
Journal:  Interface Focus       Date:  2011-06-28       Impact factor: 3.906

3.  Tetrahedral DNA nanostructures facilitate neural stem cell migration via activating RHOA/ROCK2 signalling pathway.

Authors:  Wenjuan Ma; Xueping Xie; Xiaoru Shao; Yuxin Zhang; Chenchen Mao; Yuxi Zhan; Dan Zhao; Mengting Liu; Qianshun Li; Yunfeng Lin
Journal:  Cell Prolif       Date:  2018-08-09       Impact factor: 6.831

4.  Controllable Self-Assembly of RNA Tetrahedrons with Precise Shape and Size for Cancer Targeting.

Authors:  Hui Li; Kaiming Zhang; Fengmei Pi; Sijin Guo; Luda Shlyakhtenko; Wah Chiu; Dan Shu; Peixuan Guo
Journal:  Adv Mater       Date:  2016-06-20       Impact factor: 30.849

Review 5.  Challenges and opportunities for structural DNA nanotechnology.

Authors:  Andre V Pinheiro; Dongran Han; William M Shih; Hao Yan
Journal:  Nat Nanotechnol       Date:  2011-11-06       Impact factor: 39.213

6.  A synthetic icosahedral DNA-based host-cargo complex for functional in vivo imaging.

Authors:  Dhiraj Bhatia; Sunaina Surana; Saikat Chakraborty; Sandhya P Koushika; Yamuna Krishnan
Journal:  Nat Commun       Date:  2011-06-07       Impact factor: 14.919

7.  Design of a single-chain polypeptide tetrahedron assembled from coiled-coil segments.

Authors:  Helena Gradišar; Sabina Božič; Tibor Doles; Damjan Vengust; Iva Hafner-Bratkovič; Alenka Mertelj; Ben Webb; Andrej Šali; Sandi Klavžar; Roman Jerala
Journal:  Nat Chem Biol       Date:  2013-04-28       Impact factor: 15.040

8.  A structurally variable hinged tetrahedron framework from DNA origami.

Authors:  David M Smith; Verena Schüller; Carsten Forthmann; Robert Schreiber; Philip Tinnefeld; Tim Liedl
Journal:  J Nucleic Acids       Date:  2011-09-18

Review 9.  Self-assembled bionanostructures: proteins following the lead of DNA nanostructures.

Authors:  Helena Gradišar; Roman Jerala
Journal:  J Nanobiotechnology       Date:  2014-02-03       Impact factor: 10.435

10.  Physicochemically tunable polyfunctionalized RNA square architecture with fluorogenic and ribozymatic properties.

Authors:  Daniel L Jasinski; Emil F Khisamutdinov; Yuri L Lyubchenko; Peixuan Guo
Journal:  ACS Nano       Date:  2014-08-26       Impact factor: 15.881

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.