Literature DB >> 19736955

Intermolecular proton transfer in microhydrated guanine-cytosine base pairs: a new mechanism for spontaneous mutation in DNA.

J P Cerón-Carrasco1, A Requena, J Zúñiga, C Michaux, E A Perpète, D Jacquemin.   

Abstract

Accurate calculations of the double proton transfer (DPT) in the adenine-thymine base pair (AT) were presented in a previous work [J. Phys. Chem. A 2009, 113, 7892.] where we demonstrated that the mechanism of the reaction in solution is strongly affected by surrounding water. Here we extend our methodology to the guanine-cytosine base pair (GC), for which it turns out that the proton transfer in the gas phase is a synchronous concerted mechanism. The O(G)-H-N(C) hydrogen bond strength emerges as the key parameter in this process, to the extent that complete transfer takes place by means of this hydrogen bond. Since the main effect of the molecular environment is precisely to weaken this bond, the direct proton transfer is not possible in solution, and thus the tautomeric equilibrium must be assisted by surrounding water molecules in an asynchronous concerted mechanism. This result demonstrates that water plays a crucial role in proton reactions. It does not act as a passive element but actually catalyzes the DPT.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19736955     DOI: 10.1021/jp906551f

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  6 in total

1.  Mechanistic insight into the tautomerization of histidine initiated by water-catalyzed N-H and C-H cleavages.

Authors:  Xueying Zhu; Zijiao Chen; Hongqi Ai
Journal:  J Mol Model       Date:  2022-09-22       Impact factor: 2.172

2.  The influence of base pair tautomerism on single point mutations in aqueous DNA.

Authors:  A Gheorghiu; P V Coveney; A A Arabi
Journal:  Interface Focus       Date:  2020-10-16       Impact factor: 3.906

3.  Theoretical study of mechanisms for the hydrolytic deamination of cytosine via steered molecular dynamic simulations.

Authors:  S Tolosa; J A Sansón; A Hidalgo
Journal:  RSC Adv       Date:  2018-10-11       Impact factor: 3.361

4.  Substrate dependent reaction channels of the Wolff-Kishner reduction reaction: A theoretical study.

Authors:  Shinichi Yamabe; Guixiang Zeng; Wei Guan; Shigeyoshi Sakaki
Journal:  Beilstein J Org Chem       Date:  2014-01-23       Impact factor: 2.883

Review 5.  The Role of Proton Transfer on Mutations.

Authors:  Ruby Srivastava
Journal:  Front Chem       Date:  2019-08-21       Impact factor: 5.221

6.  Non-poissonian Distribution of Point Mutations in DNA.

Authors:  Nigora Turaeva; Boris L Oksengendler
Journal:  Front Chem       Date:  2020-01-31       Impact factor: 5.221

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.