Literature DB >> 19733223

A potent enhancer element in the 5'-UTR intron is crucial for transcriptional regulation of the human ubiquitin C gene.

Marzia Bianchi1, Rita Crinelli, Elisa Giacomini, Elisa Carloni, Mauro Magnani.   

Abstract

Ubiquitin (Ub) plays a crucial role in almost every aspect of cellular functions. It is encoded by four genes, of which UbC is known to meet cell demand for ubiquitin in both basal and stressful conditions. To understand the molecular mechanisms regulating UbC gene expression, we performed a functional characterization of the UbC promoter. Deletion analyses on the 5' end of the -916/+878 promoter region, excluded the functional importance of nt -916/-371 in the transcriptional regulation of the gene, while 3' deletions revealed that intron removal (nt+65/+876) resulted in a marked reduction of promoter activity in all the reporter constructs, regardless of the cell types. Intron substitution with a heterologous chimeric intron failed to restore promoter activity, thus allowing to exclude that the splicing event, per se, can be responsible for the intron-mediated burst of transcription. Gel shift assays demonstrated nuclear factor binding with the +137/+766 intron region. Reporter constructs carrying partial intron deletions confirmed that this sequence is, indeed, required for maximal transcriptional activity. Computer-based analysis found potential Sp1 binding motifs within the intron sequence and electrophoretic mobility shift and supershift assays demonstrated that both Sp1 and Sp3 transcription factors interact, in vitro, with the UbC intron, at multiple binding sites. Moreover, ectopic expression of Sp1 and Sp3 revealed that both transcription factors positively regulate UbC promoter activity. Collectively, our data highlight the very new evidence that the 5'-UTR intron is crucial in regulating UbC gene expression and provide insights into the pivotal role of Sp1/Sp3 binding to the intronic enhancer in the regulation of UbC transcription.

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Year:  2009        PMID: 19733223     DOI: 10.1016/j.gene.2009.08.013

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  31 in total

1.  Role for gene looping in intron-mediated enhancement of transcription.

Authors:  Aboudi M Moabbi; Neha Agarwal; Belal El Kaderi; Athar Ansari
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-14       Impact factor: 11.205

2.  Reverse transcriptase and intron number evolution.

Authors:  Kemin Zhou; Alan Kuo; Igor V Grigoriev
Journal:  Stem Cell Investig       Date:  2014-09-28

3.  Class-C SOX transcription factors control GnRH gene expression via the intronic transcriptional enhancer.

Authors:  Hee-Dae Kim; Han Kyoung Choe; Sooyoung Chung; Myungjin Kim; Jae Young Seong; Gi Hoon Son; Kyungjin Kim
Journal:  Mol Endocrinol       Date:  2011-04-28

4.  A mini-intronic plasmid (MIP): a novel robust transgene expression vector in vivo and in vitro.

Authors:  Jiamiao Lu; Feijie Zhang; Mark A Kay
Journal:  Mol Ther       Date:  2013-03-05       Impact factor: 11.454

5.  Intron sequences that stimulate gene expression in Arabidopsis.

Authors:  Alan B Rose; Amanda Carter; Ian Korf; Noah Kojima
Journal:  Plant Mol Biol       Date:  2016-08-05       Impact factor: 4.076

6.  Identification of transcription factors that bind to the 5'-UTR of the barley PHO2 gene.

Authors:  Paweł Sega; Katarzyna Kruszka; Łukasz Szewc; Zofia Szweykowska-Kulińska; Andrzej Pacak
Journal:  Plant Mol Biol       Date:  2019-11-19       Impact factor: 4.076

7.  The intron and 5' distal region of the soybean Gmubi promoter contribute to very high levels of gene expression in transiently and stably transformed tissues.

Authors:  Carola M De La Torre; John J Finer
Journal:  Plant Cell Rep       Date:  2014-10-08       Impact factor: 4.570

8.  Combined sense-antisense Alu elements activate the EGFP reporter gene when stable transfection.

Authors:  Zhihong Ma; Xianglong Kong; Shufeng Liu; Shuxian Yin; Yuehua Zhao; Chao Liu; Zhanjun Lv; Xiufang Wang
Journal:  Mol Genet Genomics       Date:  2017-03-29       Impact factor: 3.291

9.  HNF4α regulates claudin-7 protein expression during intestinal epithelial differentiation.

Authors:  Attila E Farkas; Roland S Hilgarth; Christopher T Capaldo; Christian Gerner-Smidt; Doris R Powell; Paula M Vertino; Michael Koval; Charles A Parkos; Asma Nusrat
Journal:  Am J Pathol       Date:  2015-08       Impact factor: 4.307

10.  Contribution of introns to the species diversity associated with the apicomplexan parasite, Neospora caninum.

Authors:  Larissa Calarco; John Ellis
Journal:  Parasitol Res       Date:  2020-01-03       Impact factor: 2.289

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