Literature DB >> 19729382

Modeling a congenital disorder of glycosylation type I in C. elegans: a genome-wide RNAi screen for N-glycosylation-dependent loci.

Weston B Struwe1, Bethany L Hughes, David W Osborn, Erica D Boudreau, Kristin M D Shaw, Charles E Warren.   

Abstract

Inefficient glycosylation caused by defective synthesis of lipid-linked oligosaccharide donor results in multi-systemic syndromes known as congenital disorders of glycosylation type I (CDG-I). Strong loss of function mutations are embryonic lethal, patients with partial losses of function are occasionally born but are very ill, presenting with defects in virtually every tissue. CDG-I clinical expression varies considerably and ranges from very mild to severe, and the underlying cause of the variable clinical features is not yet understood. We postulate that accompanying defects in an individual's genetic background enhance the severity of CDG-I clinical phenotypes. Since so many protein structures and functions are compromised in CDG-I illnesses, the gene products that are dependent on N-linked glycosylation which cause lethality or particular symptoms are difficult to resolve. The power of genetic silencing that is a characteristic of C. elegans has allowed us to systematically dissect the complex glycosylation phenotype observed in CDG-I patients into specific glycan-dependent gene products. To accomplish this, we inhibited glycosylation with a sub-phenotypic dose of tunicamycin, reduced single genes by RNA interference, and then sought loci where the combination caused a synthetic or dramatically enhanced phenotype. This screen has identified genes in C. elegans that require N-linked glycans to function properly as well as candidate gene homologues that may enhance the clinical severity of CDG-I disorders in humans.

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Year:  2009        PMID: 19729382      PMCID: PMC2782245          DOI: 10.1093/glycob/cwp136

Source DB:  PubMed          Journal:  Glycobiology        ISSN: 0959-6658            Impact factor:   4.313


  38 in total

1.  Complementary signaling pathways regulate the unfolded protein response and are required for C. elegans development.

Authors:  X Shen; R E Ellis; K Lee; C Y Liu; K Yang; A Solomon; H Yoshida; R Morimoto; D M Kurnit; K Mori; R J Kaufman
Journal:  Cell       Date:  2001-12-28       Impact factor: 41.582

2.  A frequent mild mutation in ALG6 may exacerbate the clinical severity of patients with congenital disorder of glycosylation Ia (CDG-Ia) caused by phosphomannomutase deficiency.

Authors:  Vibeke Westphal; Susanne Kjaergaard; Els Schollen; Kevin Martens; Stephanie Grunewald; Marianne Schwartz; Gert Matthijs; Hudson H Freeze
Journal:  Hum Mol Genet       Date:  2002-03-01       Impact factor: 6.150

Review 3.  Congenital disorders of glycosylation.

Authors:  J Jaeken; G Matthijs
Journal:  Annu Rev Genomics Hum Genet       Date:  2001       Impact factor: 8.929

4.  The type I membrane protein EFF-1 is essential for developmental cell fusion.

Authors:  William A Mohler; Gidi Shemer; Jacob J del Campo; Clari Valansi; Eugene Opoku-Serebuoh; Victoria Scranton; Nirit Assaf; John G White; Benjamin Podbilewicz
Journal:  Dev Cell       Date:  2002-03       Impact factor: 12.270

5.  Deficiency of UDP-GlcNAc:Dolichol Phosphate N-Acetylglucosamine-1 Phosphate Transferase (DPAGT1) causes a novel congenital disorder of Glycosylation Type Ij.

Authors:  Xiaohua Wu; Jeffrey S Rush; Denise Karaoglu; Donna Krasnewich; Mark S Lubinsky; Charles J Waechter; Reid Gilmore; Hudson H Freeze
Journal:  Hum Mutat       Date:  2003-08       Impact factor: 4.878

6.  A new case of CDG-x with stereotyped dystonic hand movements and optic atrophy.

Authors:  V Prietsch; V Peters; R Hackler; R Jakobi; B Assmann; J Fang; C Körner; A Helwig-Rolig; J R Schaefer; G F Hoffmann
Journal:  J Inherit Metab Dis       Date:  2002-05       Impact factor: 4.982

7.  The SQV-1 UDP-glucuronic acid decarboxylase and the SQV-7 nucleotide-sugar transporter may act in the Golgi apparatus to affect Caenorhabditis elegans vulval morphogenesis and embryonic development.

Authors:  Ho-Yon Hwang; H Robert Horvitz
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-21       Impact factor: 11.205

8.  Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.

Authors:  Ravi S Kamath; Andrew G Fraser; Yan Dong; Gino Poulin; Richard Durbin; Monica Gotta; Alexander Kanapin; Nathalie Le Bot; Sergio Moreno; Marc Sohrmann; David P Welchman; Peder Zipperlen; Julie Ahringer
Journal:  Nature       Date:  2003-01-16       Impact factor: 49.962

9.  Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals novel gene functions.

Authors:  Femke Simmer; Celine Moorman; Alexander M van der Linden; Ewart Kuijk; Peter V E van den Berghe; Ravi S Kamath; Andrew G Fraser; Julie Ahringer; Ronald H A Plasterk
Journal:  PLoS Biol       Date:  2003-10-13       Impact factor: 8.029

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169

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  14 in total

Review 1.  N-glycoprotein macroheterogeneity: biological implications and proteomic characterization.

Authors:  Lucia F Zacchi; Benjamin L Schulz
Journal:  Glycoconj J       Date:  2015-12-05       Impact factor: 2.916

2.  MANF deletion abrogates early larval Caenorhabditis elegans stress response to tunicamycin and Pseudomonas aeruginosa.

Authors:  Jessica H Hartman; Christopher T Richie; Kacy L Gordon; Danielle F Mello; Priscila Castillo; April Zhu; Yun Wang; Barry J Hoffer; David R Sherwood; Joel N Meyer; Brandon K Harvey
Journal:  Eur J Cell Biol       Date:  2019-05-21       Impact factor: 4.492

3.  The class I α1,2-mannosidases of Caenorhabditis elegans.

Authors:  Iain B H Wilson
Journal:  Glycoconj J       Date:  2012-04-26       Impact factor: 2.916

4.  Activation of the endoplasmic reticulum unfolded protein response by lipid disequilibrium without disturbed proteostasis in vivo.

Authors:  Nicole S Hou; Aljona Gutschmidt; Daniel Y Choi; Keouna Pather; Xun Shi; Jennifer L Watts; Thorsten Hoppe; Stefan Taubert
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-19       Impact factor: 11.205

Review 5.  Metabolic manipulation of glycosylation disorders in humans and animal models.

Authors:  Hudson H Freeze; Vandana Sharma
Journal:  Semin Cell Dev Biol       Date:  2010-04-02       Impact factor: 7.727

6.  UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase is indispensable for oogenesis, oocyte-to-embryo transition, and larval development of the nematode Caenorhabditis elegans.

Authors:  Nanako Kanaki; Ayako Matsuda; Katsufumi Dejima; Daisuke Murata; Kazuko H Nomura; Takashi Ohkura; Keiko Gengyo-Ando; Sawako Yoshina; Shohei Mitani; Kazuya Nomura
Journal:  Glycobiology       Date:  2019-02-01       Impact factor: 4.313

Review 7.  A glycobiology review: carbohydrates, lectins and implications in cancer therapeutics.

Authors:  Haike Ghazarian; Brian Idoni; Steven B Oppenheimer
Journal:  Acta Histochem       Date:  2010-03-02       Impact factor: 2.479

8.  RNAi screening of human glycogene orthologs in the nematode Caenorhabditis elegans and the construction of the C. elegans glycogene database.

Authors:  Sayaka Akiyoshi; Kazuko H Nomura; Katsufumi Dejima; Daisuke Murata; Ayako Matsuda; Nanako Kanaki; Tetsuro Takaki; Hiroyuki Mihara; Takayuki Nagaishi; Shuhei Furukawa; Keiko-Gengyo Ando; Sawako Yoshina; Shohei Mitani; Akira Togayachi; Yoshinori Suzuki; Toshihide Shikanai; Hisashi Narimatsu; Kazuya Nomura
Journal:  Glycobiology       Date:  2014-08-04       Impact factor: 4.313

Review 9.  Therapies and therapeutic approaches in Congenital Disorders of Glycosylation.

Authors:  Christian Thiel; Christian Körner
Journal:  Glycoconj J       Date:  2012-09-16       Impact factor: 2.916

10.  Measurements of Physiological Stress Responses in C. Elegans.

Authors:  Raz Bar-Ziv; Ashley E Frakes; Ryo Higuchi-Sanabria; Theodore Bolas; Phillip A Frankino; Holly K Gildea; Melissa G Metcalf; Andrew Dillin
Journal:  J Vis Exp       Date:  2020-05-21       Impact factor: 1.355

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