Literature DB >> 19725497

Cis-trans proline isomerization effects on collagen triple-helix stability are limited.

Nan Dai1, Felicia A Etzkorn.   

Abstract

We investigated the effect of restricting cis-trans proline isomerization on collagen triple-helix stability. The Pro residues at the Xaa and Yaa positions of an (Xaa-Yaa-Gly) triplet were replaced by a Pro-trans-Pro alkene isostere in the host-guest peptide, H-(Pro-Pro-Gly)(10)-OH. The resulting alkene isostere peptide had a T(m) value 53.6 degrees C lower than that of the control peptide. The Pro-trans-Pro alkene isostere peptide had a T(m) value 3.9 degrees C higher than that of the previously reported Pro-trans-Gly alkene isostere peptide that did not involve cis-trans Pro isomerization (Jenkins, C. L.; Vasbinder, M. M.; Miller, S. J.; Raines, R. T. Org. Lett. 2005, 7, 2619-22). Thus, single cis-trans proline amide isomerization alone has limited contribution to the overall stability of the collagen triple helix. Since collagen has a high content of imino acid residues, the cumulative effects of cis-trans isomerization may be quite significant. The peptide containing the Pro-trans-Pro isostere was significantly less stable than the previously reported Gly-trans-Pro alkene isostere peptide that retained the backbone interchain hydrogen bond (Dai, N.; Wang, X. J.; Etzkorn, F. A. J. Am. Chem. Soc. 2008, 130, 5396-5397), which confirms that direct interchain backbone hydrogen bonding is a major force for stabilizing the collagen triple helix.

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Year:  2009        PMID: 19725497     DOI: 10.1021/ja904177k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  14 in total

Review 1.  An evaluation of peptide-bond isosteres.

Authors:  Amit Choudhary; Ronald T Raines
Journal:  Chembiochem       Date:  2011-07-12       Impact factor: 3.164

2.  Stabilization of collagen-model, triple-helical peptides for in vitro and in vivo applications.

Authors:  Manishabrata Bhowmick; Gregg B Fields
Journal:  Methods Mol Biol       Date:  2013

3.  Prolyl 4-Hydroxylase: Substrate Isosteres in Which an (E)- or (Z)-Alkene Replaces the Prolyl Peptide Bond.

Authors:  James D Vasta; Amit Choudhary; Katrina H Jensen; Nicholas A McGrath; Ronald T Raines
Journal:  Biochemistry       Date:  2016-12-21       Impact factor: 3.162

4.  n --> pi* Interaction and n)(pi Pauli repulsion are antagonistic for protein stability.

Authors:  Charles E Jakobsche; Amit Choudhary; Scott J Miller; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2010-05-19       Impact factor: 15.419

5.  Intimate interactions with carbonyl groups: dipole-dipole or n→π*?

Authors:  Kimberli J Kamer; Amit Choudhary; Ronald T Raines
Journal:  J Org Chem       Date:  2012-12-10       Impact factor: 4.354

Review 6.  Synthesis and biological applications of collagen-model triple-helical peptides.

Authors:  Gregg B Fields
Journal:  Org Biomol Chem       Date:  2010-01-20       Impact factor: 3.876

7.  Thioamides in the collagen triple helix.

Authors:  Robert W Newberry; Brett VanVeller; Ronald T Raines
Journal:  Chem Commun (Camb)       Date:  2015-06-14       Impact factor: 6.222

8.  n-->pi* interactions in proteins.

Authors:  Gail J Bartlett; Amit Choudhary; Ronald T Raines; Derek N Woolfson
Journal:  Nat Chem Biol       Date:  2010-07-11       Impact factor: 15.040

9.  A Single Stereodynamic Center Modulates the Rate of Self-Assembly in a Biomolecular System.

Authors:  Yitao Zhang; Roy M Malamakal; David M Chenoweth
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-23       Impact factor: 15.336

10.  n→π* interactions of amides and thioamides: implications for protein stability.

Authors:  Robert W Newberry; Brett VanVeller; Ilia A Guzei; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2013-05-20       Impact factor: 15.419

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