Literature DB >> 19724142

Cloning, expression, crystallization and preliminary X-ray crystallographic analysis of leucine aminopeptidase (LAP) from the pepA gene of Xanthomonas oryzae pv. oryzae.

Kim-Hung Huynh1, Sampath Natarajan, Jeongyoon Choi, Na-Hyun Song, Jeong-Gu Kim, Byoung-Moo Lee, Yeh-Jin Ahn, Lin-Woo Kang.   

Abstract

Xanthomonas oryzae pv. oryzae (Xoo) causes the serious disease bacterial blight in rice. The pepA (Xoo0834) gene from Xoo is one of around 100 genes that have been selected for the design of antibacterial drugs. The pepA gene encodes leucine aminopeptidase (LAP), an exopeptidase that catalyzes the hydrolysis of leucine residues from the N-terminus of a protein or peptide. This enzyme was expressed in Escherichia coli, purified and crystallized, and preliminary X-ray structural studies have been carried out. The LAP crystal diffracted to 2.6 A resolution and belonged to the cubic space group P2(1)3. The unit-cell volume of the crystal was compatible with the presence of two monomers in the asymmetric unit.

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Year:  2009        PMID: 19724142      PMCID: PMC2795610          DOI: 10.1107/S1744309109031467

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

1.  Genomic approaches to antibacterial discovery.

Authors:  David J Payne; Michael N Gwynn; David J Holmes; Marty Rosenberg
Journal:  Methods Mol Biol       Date:  2004

2.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

Review 3.  Drugs for bad bugs: confronting the challenges of antibacterial discovery.

Authors:  David J Payne; Michael N Gwynn; David J Holmes; David L Pompliano
Journal:  Nat Rev Drug Discov       Date:  2006-12-08       Impact factor: 84.694

Review 4.  Leucine aminopeptidases: diversity in structure and function.

Authors:  Mikiko Matsui; Jonathan H Fowler; Linda L Walling
Journal:  Biol Chem       Date:  2006-12       Impact factor: 3.915

5.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  X-ray structure of aminopeptidase A from Escherichia coli and a model for the nucleoprotein complex in Xer site-specific recombination.

Authors:  N Sträter; D J Sherratt; S D Colloms
Journal:  EMBO J       Date:  1999-08-16       Impact factor: 11.598

8.  Expression, crystallization and preliminary X-ray crystallographic analysis of Xoo0352, D-alanine-D-alanine ligase A, from Xanthomonas oryzae pv. oryzae.

Authors:  Thanh Thi Ngoc Doan; Jin-Kwang Kim; Hyesoon Kim; Yeh-Jin Ahn; Jeong-Gu Kim; Byoung-Moo Lee; Lin-Woo Kang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-11-28

9.  MEROPS: the peptidase database.

Authors:  Neil D Rawlings; Fraser R Morton; Alan J Barrett
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

10.  The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice.

Authors:  Byoung-Moo Lee; Young-Jin Park; Dong-Suk Park; Hee-Wan Kang; Jeong-Gu Kim; Eun-Sung Song; In-Cheol Park; Ung-Han Yoon; Jang-Ho Hahn; Bon-Sung Koo; Gil-Bok Lee; Hyungtae Kim; Hyun-Seok Park; Kyong-Oh Yoon; Jeong-Hyun Kim; Chol-hee Jung; Nae-Hyung Koh; Jeong-Sun Seo; Seung-Joo Go
Journal:  Nucleic Acids Res       Date:  2005-01-26       Impact factor: 16.971

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  2 in total

1.  Crystal structure of XoLAP, a leucine aminopeptidase, from Xanthomonas oryzae pv. oryzae.

Authors:  Jin-Kwang Kim; Sampath Natarajan; Hanseul Park; Kim-Hung Huynh; Sang Hee Lee; Jeong-Gu Kim; Yeh-Jin Ahn; Lin-Woo Kang
Journal:  J Microbiol       Date:  2013-10-31       Impact factor: 3.422

2.  Plant leucine aminopeptidases moonlight as molecular chaperones to alleviate stress-induced damage.

Authors:  Melissa A Scranton; Ashley Yee; Sang-Youl Park; Linda L Walling
Journal:  J Biol Chem       Date:  2012-04-05       Impact factor: 5.157

  2 in total

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