Literature DB >> 19724136

Crystallization and preliminary X-ray diffraction studies of the ubiquitin-like (UbL) domain of the human homologue A of Rad23 (hHR23A) protein.

Yu Wai Chen1, Toshitaka Tajima, Martin Rees, Mitla Garcia-Maya.   

Abstract

Human homologue A of Rad23 (hHR23A) plays dual roles in DNA repair as well as serving as a shuttle vehicle targeting polyubiquitinated proteins for degradation. Its N-terminal ubiquitin-like (UbL) domain interacts with the 19S proteasomal cap and provides the docking mechanism for protein delivery. Pyramidal crystals of the UbL domain of hHR23A were obtained by the hanging-drop vapour-diffusion method with ammonium sulfate as the crystallizing agent. The crystals diffracted to beyond 2 A resolution and belonged to the hexagonal space group P6(5)22, with unit-cell parameters a = b = 78.48, c = 63.57 A. The structure was solved by molecular replacement using the UbL domain of yeast Dsk2 as the search model.

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Year:  2009        PMID: 19724136      PMCID: PMC2795604          DOI: 10.1107/S1744309109031376

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

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Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  DNA-repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a.

Authors:  Kylie J Walters; Patrycja J Lech; Amanda M Goh; Qinghua Wang; Peter M Howley
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-13       Impact factor: 11.205

3.  Binding of polyubiquitin chains to ubiquitin-associated (UBA) domains of HHR23A.

Authors:  Shahri Raasi; Irina Orlov; Karen G Fleming; Cecile M Pickart
Journal:  J Mol Biol       Date:  2004-08-27       Impact factor: 5.469

Review 4.  The ubiquitin receptor Rad23: at the crossroads of nucleotide excision repair and proteasomal degradation.

Authors:  Nico P Dantuma; Christian Heinen; Deborah Hoogstraten
Journal:  DNA Repair (Amst)       Date:  2009-02-14

Review 5.  Functional roles of ubiquitin-like domain (ULD) and ubiquitin-binding domain (UBD) containing proteins.

Authors:  Caroline Grabbe; Ivan Dikic
Journal:  Chem Rev       Date:  2009-04       Impact factor: 60.622

6.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

7.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

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Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

8.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

9.  Components of the ubiquitin-proteasome pathway compete for surfaces on Rad23 family proteins.

Authors:  Amanda M Goh; Kylie J Walters; Suzanne Elsasser; Rati Verma; Raymond J Deshaies; Daniel Finley; Peter M Howley
Journal:  BMC Biochem       Date:  2008-01-30       Impact factor: 4.059

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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