Literature DB >> 19724134

Crystallization and preliminary X-ray analysis of flap endonuclease 1 (FEN1) from Desulfurococcus amylolyticus.

Tomoko Mase1, Keiko Kubota, Ken-ichi Miyazono, Yutaka Kawarabayasi, Masaru Tanokura.   

Abstract

Flap endonuclease 1 (FEN1) is a structure-specific nuclease that removes 5'-overhanging flaps in DNA repair and removes the RNA/DNA primer during maturation of the Okazaki fragment in lagging-strand DNA replication. FEN1 from the hyperthermophilic archaeon Desulfurococcus amylolyticus was expressed in Escherichia coli, purified and crystallized using the sitting-drop vapour-diffusion method with monoammonium dihydrogen phosphate as the precipitant at pH 8.3. X-ray diffraction data were collected to 2.00 A resolution. The space group of the crystal was determined as the primitive hexagonal space group P321, with unit-cell parameters a = b = 103.76, c = 84.58 A. The crystal contained one molecule in the asymmetric unit.

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Year:  2009        PMID: 19724134      PMCID: PMC2795602          DOI: 10.1107/S1744309109031248

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  22 in total

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Authors:  T A Ceska; J R Sayers; G Stier; D Suck
Journal:  Nature       Date:  1996-07-04       Impact factor: 49.962

Review 2.  The FEN-1 family of structure-specific nucleases in eukaryotic DNA replication, recombination and repair.

Authors:  M R Lieber
Journal:  Bioessays       Date:  1997-03       Impact factor: 4.345

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Authors:  A Klungland; T Lindahl
Journal:  EMBO J       Date:  1997-06-02       Impact factor: 11.598

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Authors:  Y Kim; S H Eom; J Wang; D S Lee; S W Suh; T A Steitz
Journal:  Nature       Date:  1995-08-17       Impact factor: 49.962

5.  The calf 5'- to 3'-exonuclease is also an endonuclease with both activities dependent on primers annealed upstream of the point of cleavage.

Authors:  R S Murante; L Huang; J J Turchi; R A Bambara
Journal:  J Biol Chem       Date:  1994-01-14       Impact factor: 5.157

6.  Calf 5' to 3' exo/endonuclease must slide from a 5' end of the substrate to perform structure-specific cleavage.

Authors:  R S Murante; L Rust; R A Bambara
Journal:  J Biol Chem       Date:  1995-12-22       Impact factor: 5.157

7.  Structure of bacteriophage T4 RNase H, a 5' to 3' RNA-DNA and DNA-DNA exonuclease with sequence similarity to the RAD2 family of eukaryotic proteins.

Authors:  T C Mueser; N G Nossal; C C Hyde
Journal:  Cell       Date:  1996-06-28       Impact factor: 41.582

8.  A novel mutation avoidance mechanism dependent on S. cerevisiae RAD27 is distinct from DNA mismatch repair.

Authors:  D X Tishkoff; N Filosi; G M Gaida; R D Kolodner
Journal:  Cell       Date:  1997-01-24       Impact factor: 41.582

9.  Requirement of the yeast RTH1 5' to 3' exonuclease for the stability of simple repetitive DNA.

Authors:  R E Johnson; G K Kovvali; L Prakash; S Prakash
Journal:  Science       Date:  1995-07-14       Impact factor: 47.728

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Authors:  J J Harrington; M R Lieber
Journal:  EMBO J       Date:  1994-03-01       Impact factor: 11.598

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  2 in total

1.  Structure of flap endonuclease 1 from the hyperthermophilic archaeon Desulfurococcus amylolyticus.

Authors:  Tomoko Mase; Keiko Kubota; Ken-ichi Miyazono; Yutaka Kawarabayasi; Masaru Tanokura
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-01-21

Review 2.  The wonders of flap endonucleases: structure, function, mechanism and regulation.

Authors:  L David Finger; John M Atack; Susan Tsutakawa; Scott Classen; John Tainer; Jane Grasby; Binghui Shen
Journal:  Subcell Biochem       Date:  2012
  2 in total

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