Literature DB >> 19719100

The many facets of adenine: coordination, crystal patterns, and catalysis.

Sandeep Verma1, Ashutosh Kumar Mishra, Jitendra Kumar.   

Abstract

Canonical purine-pyrimidine base pairs, the key to the complementary hydrogen bonding in nucleic acids, are fundamental molecular recognition motifs crucial for the formation and stability of double-helical DNA. Consequently, focused study and modeling of nucleobase hydrogen-bonding schemes have spawned a vast array of chemical and biophysical investigations. The Watson-Crick, reverse Watson-Crick, Hoogsteen, and reverse Hoogsteen hydrogen-bonding schemes stabilize various nucleic acid structures. As a result, numerous modified bases have been designed to maximize such interactions, addressing specific problems related to base pairing and giving rise to supramolecular ensembles in solution or in the solid state. It is also important to realize that suitably predisposed imino nitrogens and other functional groups present in heterocyclic nucleobases present a versatile molecular framework for the construction of coordination architectures, which may be harnessed to mimic base polyads and higher order nucleic acid structures. Adenine, a purine nucleobase, is an important naturally occurring nitrogen heterocycle present in nucleic acids. It is notable that the adenine unit is also frequently encountered as an inextricable part of enzyme cofactors and second messenger systems, such as NAD(+), FADH(2), and cAMP, which are essential for certain catalytic reactions and biochemical processes. In addition, a crucial catalytic role of the adenine moiety is also observed in group II intron catalysis and at the ribosomal peptidyltransferase center. Such versatile functional roles of the adenine framework serve as an inspiration for addressing research problems, ranging from classical coordination chemistry to the development of new materials. In this Account, we begin by describing the emerging use of adenine nucleobase for the design of metal-nucleobase frameworks. The coordination of metal ions affords a variety of oligomeric and polymeric species; we focus on silver- and copper-based structures and also discuss ferrocenylated adenine tetrads. We then consider the use of supramolecular adenine coordination complexes for transferring molecular properties onto surfaces. This technique is particularly useful for transferring noncovalent interactions, such as van der Waals forces, electrostatic interactions, and hydrogen bonding, to designed architectures in nanoscale applications. Finally, we explore the issue of adenine-based catalytic entities. Here, adenine moieties are first fixed in a polymeric matrix, followed by metalation of the matrix. These metalated adenine-containing polymers are then assayed for catalytic assistance in various chemical and biochemical reactions. Taken together, the versatile coordination abilities and hydrogen-bonding capacity of adenine offer a novel entry point for a natural ligand into materials synthesis.

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Year:  2010        PMID: 19719100     DOI: 10.1021/ar9001334

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  9 in total

1.  The exocyclic amino group of adenine in PtII and PdII complexes: a critical comparison of the X-ray crystallographic structural data and gas phase calculations.

Authors:  Radu Silaghi-Dumitrescu; Béla Mihály; Timea Mihály; Amr A A Attia; Pablo J Sanz Miguel; Bernhard Lippert
Journal:  J Biol Inorg Chem       Date:  2017-03-17       Impact factor: 3.358

2.  Molecular Architectures Derived from Metal Ions and the Flexible 3,3'-Bipyridine Ligand: Unexpected Dimer with Hg(II).

Authors:  Anupam Khutia; Pablo J Sanz Miguel; Bernhard Lippert
Journal:  Bioinorg Chem Appl       Date:  2010-05-30       Impact factor: 7.778

3.  Adsorption of CO2 on amine-functionalized green metal-organic framework: an interaction between amine and CO2 molecules.

Authors:  Ayesha Rehman; Sarah Farrukh; Arshad Hussain; Xianfeng Fan; Erum Pervaiz
Journal:  Environ Sci Pollut Res Int       Date:  2019-11-11       Impact factor: 4.223

Review 4.  Functional Systems Derived from Nucleobase Self-assembly.

Authors:  Anselmo Del Prado; David González-Rodríguez; Yi-Lin Wu
Journal:  ChemistryOpen       Date:  2020-04-01       Impact factor: 2.911

5.  Incorporation of a metal-mediated base pair into an ATP aptamer - using silver(I) ions to modulate aptamer function.

Authors:  Marius H Heddinga; Jens Müller
Journal:  Beilstein J Org Chem       Date:  2020-11-25       Impact factor: 2.883

6.  Dicopper(II)-EDTA Chelate as a Bicephalic Receptor Model for a Synthetic Adenine Nucleoside.

Authors:  María Eugenia García-Rubiño; Antonio Matilla-Hernández; Antonio Frontera; Luis Lezama; Juan Niclós-Gutiérrez; Duane Choquesillo-Lazarte
Journal:  Pharmaceuticals (Basel)       Date:  2021-05-02

7.  Evolutionary convergence in the biosyntheses of the imidazole moieties of histidine and purines.

Authors:  Alberto Vázquez-Salazar; Arturo Becerra; Antonio Lazcano
Journal:  PLoS One       Date:  2018-04-26       Impact factor: 3.240

8.  Shedding Light on the Protonation States and Location of Protonated N Atoms of Adenine in Metal-Organic Frameworks.

Authors:  Andrzej Gładysiak; Tu N Nguyen; Samantha L Anderson; Peter G Boyd; Robert G Palgrave; John Bacsa; Berend Smit; Matthew J Rosseinsky; Kyriakos C Stylianou
Journal:  Inorg Chem       Date:  2018-02-01       Impact factor: 5.165

Review 9.  DNA-Templated Fluorescent Nanoclusters for Metal Ions Detection.

Authors:  Chunxia Song; Jingyuan Xu; Ying Chen; Liangliang Zhang; Ying Lu; Zhihe Qing
Journal:  Molecules       Date:  2019-11-19       Impact factor: 4.411

  9 in total

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