Literature DB >> 19716691

From biomolecular structure to functional understanding: new NMR developments narrow the gap.

Stephan Grzesiek1, Hans-Jürgen Sass.   

Abstract

Biomolecular structure provides the framework for dynamics and function. However, the information of more than 50000 protein and nucleic acid structures solved today has not yet yielded enough insight such that function could be predicted from structure or that structures and dynamics could be predicted to high resolution from sequence alone. Further experimental information is urgently needed to guide the process of relating sequence, structure, dynamics, and ultimately function. Recent progress in solution NMR methods encompasses better detection of dynamics and molecular interactions, a more detailed characterization of folding transitions, increases of the molecular weight limit and sensitivity, strongly enhanced computational approaches, and the in-cell detection of molecules. These developments are highly complementary and narrow the gap between structure and functional understanding. This article discusses recent advances and applications.

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Year:  2009        PMID: 19716691     DOI: 10.1016/j.sbi.2009.07.015

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  9 in total

1.  Nonadditivity in conformational entropy upon molecular rigidification reveals a universal mechanism affecting folding cooperativity.

Authors:  Oleg K Vorov; Dennis R Livesay; Donald J Jacobs
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

2.  Carbohydrate dynamics: Antibody glycans wiggle and jiggle.

Authors:  Sebastian Meier; Jens Duus
Journal:  Nat Chem Biol       Date:  2011-03       Impact factor: 15.040

3.  Nucleic acid helix structure determination from NMR proton chemical shifts.

Authors:  Ramon M van der Werf; Marco Tessari; Sybren S Wijmenga
Journal:  J Biomol NMR       Date:  2013-04-06       Impact factor: 2.835

4.  Characterizing protein crystal contacts and their role in crystallization: rubredoxin as a case study.

Authors:  Diana Fusco; Jeffrey J Headd; Alfonso De Simone; Jun Wang; Patrick Charbonneau
Journal:  Soft Matter       Date:  2014-01-14       Impact factor: 3.679

Review 5.  Ensemble-based methods for describing protein dynamics.

Authors:  Donald J Jacobs
Journal:  Curr Opin Pharmacol       Date:  2010-10-19       Impact factor: 5.547

6.  NMR reveals the allosteric opening and closing of Abelson tyrosine kinase by ATP-site and myristoyl pocket inhibitors.

Authors:  Lukasz Skora; Jürgen Mestan; Doriano Fabbro; Wolfgang Jahnke; Stephan Grzesiek
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

Review 7.  Functional polymers in protein detection platforms: optical, electrochemical, electrical, mass-sensitive, and magnetic biosensors.

Authors:  Jong-in Hahm
Journal:  Sensors (Basel)       Date:  2011       Impact factor: 3.576

8.  A quality metric for homology modeling: the H-factor.

Authors:  Eric di Luccio; Patrice Koehl
Journal:  BMC Bioinformatics       Date:  2011-02-04       Impact factor: 3.169

9.  Automated NMR relaxation dispersion data analysis using NESSY.

Authors:  Michael Bieri; Paul R Gooley
Journal:  BMC Bioinformatics       Date:  2011-10-27       Impact factor: 3.169

  9 in total

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