Literature DB >> 19715345

Theoretical prediction of hydrogen bond strength for use in molecular modeling.

Monika Nocker1, Sandra Handschuh, Christofer Tautermann, Klaus R Liedl.   

Abstract

Hybrid density functional theory calculations are used to investigate the strength of hydrogen bonds of structurally different molecules in complex with a standard donor and acceptor in vacuo. B3LYP/aug-cc-pVDZ calculations with one angle constraint lead to excellent correlations with experimental data (R(2) = 0.94, s(y) = 0.45 for acceptors and R(2) = 0.77, s(y) = 0.88 for donors). Substitutions of aromatic systems by electron donating and -withdrawing groups show a reinforcement of the interaction when substituting an acceptor with electron donating groups and weakening by substitution with electron withdrawing groups. For donor systems the opposite effect can be observed. Drug design of novel ligands will be able to profit from the predictive power of the method established, as hydrogen bonds between receptor and drug molecules are an important criterion for binding affinities.

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Year:  2009        PMID: 19715345     DOI: 10.1021/ci9001469

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  5 in total

1.  Computer-aided drug design at Boehringer Ingelheim.

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Journal:  J Comput Aided Mol Des       Date:  2016-09-20       Impact factor: 3.686

Review 2.  A medicinal chemist's guide to molecular interactions.

Authors:  Caterina Bissantz; Bernd Kuhn; Martin Stahl
Journal:  J Med Chem       Date:  2010-07-22       Impact factor: 7.446

3.  The x-ray absorption spectroscopy model of solvation about sulfur in aqueous L-cysteine.

Authors:  Ritimukta Sarangi; Patrick Frank; Maurizio Benfatto; Silvia Morante; Velia Minicozzi; Britt Hedman; Keith O Hodgson
Journal:  J Chem Phys       Date:  2012-11-28       Impact factor: 3.488

4.  Machine learning models for hydrogen bond donor and acceptor strengths using large and diverse training data generated by first-principles interaction free energies.

Authors:  Christoph A Bauer; Gisbert Schneider; Andreas H Göller
Journal:  J Cheminform       Date:  2019-09-11       Impact factor: 5.514

5.  Theoretical prediction of hydrogen-bond basicity pKBHX using quantum chemical topology descriptors.

Authors:  Anthony J Green; Paul L A Popelier
Journal:  J Chem Inf Model       Date:  2014-02-04       Impact factor: 4.956

  5 in total

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