Literature DB >> 19715310

Probing synergy between two catalytic strategies in the glycoside hydrolase O-GlcNAcase using multiple linear free energy relationships.

Ian R Greig1, Matthew S Macauley, Ian H Williams, David J Vocadlo.   

Abstract

Human O-GlcNAcase plays an important role in regulating the post-translational modification of serine and threonine residues with beta-O-linked N-acetylglucosamine monosaccharide unit (O-GlcNAc). The mechanism of O-GlcNAcase involves nucleophilic participation of the 2-acetamido group of the substrate to displace a glycosidically linked leaving group. The tolerance of this enzyme for variation in substrate structure has enabled us to characterize O-GlcNAcase transition states using several series of substrates to generate multiple simultaneous free-energy relationships. Patterns revealing changes in mechanism, transition state, and rate-determining step upon concomitant variation of both nucleophilic strength and leaving group abilities are observed. The observed changes in mechanism reflect the roles played by the enzymic general acid and the catalytic nucleophile. Significantly, these results illustrate how the enzyme synergistically harnesses both modes of catalysis; a feature that eludes many small molecule models of catalysis. These studies also suggest the kinetic significance of an oxocarbenium ion intermediate in the O-GlcNAcase-catalyzed hydrolysis of glucosaminides, probing the limits of what may be learned using nonatomistic investigations of enzymic transition-state structure and offering general insights into how the superfamily of retaining glycoside hydrolases act as efficient catalysts.

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Year:  2009        PMID: 19715310     DOI: 10.1021/ja904506u

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  Insights into O-linked N-acetylglucosamine ([0-9]O-GlcNAc) processing and dynamics through kinetic analysis of O-GlcNAc transferase and O-GlcNAcase activity on protein substrates.

Authors:  David L Shen; Tracey M Gloster; Scott A Yuzwa; David J Vocadlo
Journal:  J Biol Chem       Date:  2012-02-06       Impact factor: 5.157

2.  Nutrient-driven O-GlcNAc cycling - think globally but act locally.

Authors:  Katryn R Harwood; John A Hanover
Journal:  J Cell Sci       Date:  2014-04-24       Impact factor: 5.285

3.  Chemical synthesis of 4-azido-β-galactosamine derivatives for inhibitors of N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase.

Authors:  Seanghai Hor; Takumi Kodama; Nobuo Sugiura; Hikaru Kondou; Mio Yanagida; Keiya Yanagisawa; Aoki Shibasawa; Bunta Tsuzuki; Naoto Fukatsu; Kazuya Nagao; Kenji Yamana; Kazuya I P J Hidari; Hideto Watanabe; Osami Habuchi; Hirofumi Nakano
Journal:  Glycoconj J       Date:  2018-09-01       Impact factor: 2.916

4.  Biphenyl Gal and GalNAc FmlH Lectin Antagonists of Uropathogenic E. coli (UPEC): Optimization through Iterative Rational Drug Design.

Authors:  Amarendar Reddy Maddirala; Roger Klein; Jerome S Pinkner; Vasilios Kalas; Scott J Hultgren; James W Janetka
Journal:  J Med Chem       Date:  2019-01-02       Impact factor: 7.446

5.  Regioselective Benzylation of 2-Deoxy-2-Aminosugars Using Crown Ethers: Application to a Shortened Synthesis of Hyaluronic Acid Oligomers.

Authors:  Chinmoy Mukherjee; Lin Liu; Nicola L B Pohl
Journal:  Adv Synth Catal       Date:  2014-07-07       Impact factor: 5.837

6.  OGA inhibition by GlcNAc-selenazoline.

Authors:  Eun Ju Kim; Dona C Love; Etzer Darout; Mohannad Abdo; Brian Rempel; Stephen G Withers; Paul R Rablen; John A Hanover; Spencer Knapp
Journal:  Bioorg Med Chem       Date:  2010-08-11       Impact factor: 3.641

7.  Transition state of ADP-ribosylation of acetyllysine catalyzed by Archaeoglobus fulgidus Sir2 determined by kinetic isotope effects and computational approaches.

Authors:  Yana Cen; Anthony A Sauve
Journal:  J Am Chem Soc       Date:  2010-09-08       Impact factor: 15.419

8.  Metabolism of vertebrate amino sugars with N-glycolyl groups: intracellular β-O-linked N-glycolylglucosamine (GlcNGc), UDP-GlcNGc, and the biochemical and structural rationale for the substrate tolerance of β-O-linked β-N-acetylglucosaminidase.

Authors:  Matthew S Macauley; Jefferson Chan; Wesley F Zandberg; Yuan He; Garrett E Whitworth; Keith A Stubbs; Scott A Yuzwa; Andrew J Bennet; Ajit Varki; Gideon J Davies; David J Vocadlo
Journal:  J Biol Chem       Date:  2012-06-12       Impact factor: 5.157

9.  Hijacking a biosynthetic pathway yields a glycosyltransferase inhibitor within cells.

Authors:  Tracey M Gloster; Wesley F Zandberg; Julia E Heinonen; David L Shen; Lehua Deng; David J Vocadlo
Journal:  Nat Chem Biol       Date:  2011-01-23       Impact factor: 15.040

10.  Convenient Method of Synthesizing Aryloxyalkyl Esters from Phenolic Esters Using Halogenated Alcohols.

Authors:  Xueyang Jiang; Junting Zhou; Yue Zhou; Haopeng Sun; Jian Xu; Feng Feng; Wei Qu
Journal:  Molecules       Date:  2018-07-13       Impact factor: 4.411

  10 in total

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