Literature DB >> 19713415

ERNEST: a toolbox for chemical reaction network theory.

Nicola Soranzo1, Claudio Altafini.   

Abstract

SUMMARY: ERNEST Reaction Network Equilibria Study Toolbox is a MATLAB package which, by checking various different criteria on the structure of a chemical reaction network, can exclude the multistationarity of the corresponding reaction system. The results obtained are independent of the rate constants of the reactions, and can be used for model discrimination.
AVAILABILITY AND IMPLEMENTATION: The software, implemented in MATLAB, is available under the GNU GPL free software license from http://people.sissa.it/ approximately altafini/papers/SoAl09/. It requires the MATLAB Optimization Toolbox. CONTACT: altafini@sissa.it.

Entities:  

Mesh:

Year:  2009        PMID: 19713415     DOI: 10.1093/bioinformatics/btp513

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  4 in total

1.  On the stability of metabolic cycles.

Authors:  Ed Reznik; Daniel Segrè
Journal:  J Theor Biol       Date:  2010-07-29       Impact factor: 2.691

Review 2.  Network representations and methods for the analysis of chemical and biochemical pathways.

Authors:  Conner I Sandefur; Maya Mincheva; Santiago Schnell
Journal:  Mol Biosyst       Date:  2013-09

3.  Emergence of switch-like behavior in a large family of simple biochemical networks.

Authors:  Dan Siegal-Gaskins; Maria Katherine Mejia-Guerra; Gregory D Smith; Erich Grotewold
Journal:  PLoS Comput Biol       Date:  2011-05-12       Impact factor: 4.475

4.  Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data.

Authors:  Jan Krumsiek; Karsten Suhre; Thomas Illig; Jerzy Adamski; Fabian J Theis
Journal:  BMC Syst Biol       Date:  2011-01-31
  4 in total

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