Literature DB >> 19712362

Microbial community diversity in seafloor basalt from the Arctic spreading ridges.

Kristine Lysnes1, Ingunn H Thorseth, Bjørn Olav Steinsbu, Lise Øvreås, Terje Torsvik, Rolf B Pedersen.   

Abstract

Microbial communities inhabiting recent (< or =1 million years old; Ma) seafloor basalts from the Arctic spreading ridges were analyzed using traditional enrichment culturing methods in combination with culture-independent molecular phylogenetic techniques. Fragments of 16S rDNA were amplified from the basalt samples by polymerase chain reaction, and fingerprints of the bacterial and archaeal communities were generated using denaturing gradient gel electrophoresis. This analysis indicates a substantial degree of complexity in the samples studied, showing 20-40 dominating bands per profile for the bacterial assemblages. For the archaeal assemblages, a much lower number of bands (6-12) were detected. The phylogenetic affiliations of the predominant electrophoretic bands were inferred by performing a comparative 16S rRNA gene sequence analysis. Sequences obtained from basalts affiliated with eight main phylogenetic groups of Bacteria, but were limited to only one group of the Archaea. The most frequently retrieved bacterial sequences affiliated with the gamma-proteobacteria, alpha-proteobacteria, Chloroflexi, Firmicutes, and Actinobacteria. The archaeal sequences were restricted to the marine Group 1: Crenarchaeota. Our results indicate that the basalt harbors a distinctive microbial community, as the majority of the sequences differed from those retrieved from the surrounding seawater as well as from sequences previously reported from seawater and deep-sea sediments. Most of the sequences did not match precisely any sequences in the database, indicating that the indigenous Arctic ridge basalt microbial community is yet uncharacterized. Results from enrichment cultures showed that autolithotrophic methanogens and iron reducing bacteria were present in the seafloor basalts. We suggest that microbial catalyzed cycling of iron may be important in low-temperature alteration of ocean crust basalt. The phylogenetic and physiological diversity of the seafloor basalt microorganisms differed from those previously reported from deep-sea hydrothermal systems.

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Year:  2004        PMID: 19712362     DOI: 10.1016/j.femsec.2004.06.014

Source DB:  PubMed          Journal:  FEMS Microbiol Ecol        ISSN: 0168-6496            Impact factor:   4.194


  35 in total

1.  Bacterial biodiversity from Roopkund Glacier, Himalayan mountain ranges, India.

Authors:  Suman Pradhan; T N R Srinivas; Pavan Kumar Pindi; K Hara Kishore; Z Begum; Pawan Kumar Singh; Ashish Kumar Singh; M S Pratibha; Arun K Yasala; G S N Reddy; S Shivaji
Journal:  Extremophiles       Date:  2010-05-28       Impact factor: 2.395

2.  Bacterial diversity of soil in the vicinity of Pindari glacier, Himalayan mountain ranges, India, using culturable bacteria and soil 16S rRNA gene clones.

Authors:  S Shivaji; M S Pratibha; B Sailaja; K Hara Kishore; Ashish K Singh; Z Begum; Uttam Anarasi; S R Prabagaran; G S N Reddy; T N R Srinivas
Journal:  Extremophiles       Date:  2011-01       Impact factor: 2.395

3.  Colonization of subsurface microbial observatories deployed in young ocean crust.

Authors:  Beth N Orcutt; Wolfgang Bach; Keir Becker; Andrew T Fisher; Michael Hentscher; Brandy M Toner; C Geoffrey Wheat; Katrina J Edwards
Journal:  ISME J       Date:  2010-11-25       Impact factor: 10.302

4.  Bacterial community composition in Lake Tanganyika: vertical and horizontal heterogeneity.

Authors:  Aaike De Wever; Koenraad Muylaert; Katleen Van der Gucht; Samuel Pirlot; Christine Cocquyt; Jean-Pierre Descy; Pierre-Denis Plisnier; Wim Vyverman
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

5.  Bacterial diversity of weathered terrestrial Icelandic volcanic glasses.

Authors:  Laura C Kelly; Charles S Cockell; Yvette M Piceno; Gary L Andersen; Thorsteinn Thorsteinsson; Viggo Marteinsson
Journal:  Microb Ecol       Date:  2010-05-15       Impact factor: 4.552

Review 6.  Microbial ecology of the dark ocean above, at, and below the seafloor.

Authors:  Beth N Orcutt; Jason B Sylvan; Nina J Knab; Katrina J Edwards
Journal:  Microbiol Mol Biol Rev       Date:  2011-06       Impact factor: 11.056

7.  Comparison of bacterial diversity in proglacial soil from Kafni Glacier, Himalayan Mountain ranges, India, with the bacterial diversity of other glaciers in the world.

Authors:  T N R Srinivas; S M Singh; Suman Pradhan; M S Pratibha; K Hara Kishore; Ashish K Singh; Z Begum; S R Prabagaran; G S N Reddy; S Shivaji
Journal:  Extremophiles       Date:  2011-09-15       Impact factor: 2.395

Review 8.  Under the sea: microbial life in volcanic oceanic crust.

Authors:  Katrina J Edwards; C Geoffrey Wheat; Jason B Sylvan
Journal:  Nat Rev Microbiol       Date:  2011-09-06       Impact factor: 60.633

9.  Fungi and macroaggregation in deep-sea sediments.

Authors:  Samir Damare; Chandralata Raghukumar
Journal:  Microb Ecol       Date:  2007-11-11       Impact factor: 4.552

10.  First investigation of the microbiology of the deepest layer of ocean crust.

Authors:  Olivia U Mason; Tatsunori Nakagawa; Martin Rosner; Joy D Van Nostrand; Jizhong Zhou; Akihiko Maruyama; Martin R Fisk; Stephen J Giovannoni
Journal:  PLoS One       Date:  2010-11-05       Impact factor: 3.240

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