Literature DB >> 19706516

The structure of dimethylallyl tryptophan synthase reveals a common architecture of aromatic prenyltransferases in fungi and bacteria.

Ute Metzger1, Christoph Schall, Georg Zocher, Inge Unsöld, Edyta Stec, Shu-Ming Li, Lutz Heide, Thilo Stehle.   

Abstract

Ergot alkaloids are toxins and important pharmaceuticals that are produced biotechnologically on an industrial scale. The first committed step of ergot alkaloid biosynthesis is catalyzed by dimethylallyl tryptophan synthase (DMATS; EC 2.5.1.34). Orthologs of DMATS are found in many fungal genomes. We report here the x-ray structure of DMATS, determined at a resolution of 1.76 A. A complex of DMATS from Aspergillus fumigatus with its aromatic substrate L-tryptophan and with an analogue of its isoprenoid substrate dimethylallyl diphosphate reveals the structural basis of this enzyme-catalyzed Friedel-Crafts reaction, which shows strict regiospecificity for position 4 of the indole nucleus of tryptophan as well as unusual independence of the presence of Mg(2+) ions. The 3D structure of DMATS belongs to a rare beta/alpha barrel fold, called prenyltransferase barrel, that was recently discovered in a small group of bacterial enzymes with no sequence similarity to DMATS. These bacterial enzymes catalyze the prenylation of aromatic substrates in the biosynthesis of secondary metabolites (i.e., a reaction similar to that of DMATS).

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Year:  2009        PMID: 19706516      PMCID: PMC2732893          DOI: 10.1073/pnas.0904897106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  A structural model of the membrane-bound aromatic prenyltransferase UbiA from E. coli.

Authors:  Lars Bräuer; Wolfgang Brandt; Diana Schulze; Svetlana Zakharova; Ludger Wessjohann
Journal:  Chembiochem       Date:  2008-04-14       Impact factor: 3.164

2.  Two lysine residues are responsible for the enzymatic activities of indole prenyltransferases from fungi.

Authors:  Edyta Stec; Nicola Steffan; Anika Kremer; Huixi Zou; Xiaodong Zheng; Shu-Ming Li
Journal:  Chembiochem       Date:  2008-09-01       Impact factor: 3.164

3.  Chemoenzymatic synthesis of prenylated indole derivatives by using a 4-dimethylallyltryptophan synthase from Aspergillus fumigatus.

Authors:  Nicola Steffan; Inge A Unsöld; Shu-Ming Li
Journal:  Chembiochem       Date:  2007-07-23       Impact factor: 3.164

4.  Biosynthesis and accumulation of ergoline alkaloids in a mutualistic association between Ipomoea asarifolia (Convolvulaceae) and a clavicipitalean fungus.

Authors:  Anne Markert; Nicola Steffan; Kerstin Ploss; Sabine Hellwig; Ulrike Steiner; Christel Drewke; Shu-Ming Li; Wilhelm Boland; Eckhard Leistner
Journal:  Plant Physiol       Date:  2008-03-14       Impact factor: 8.340

5.  Tryptophan aminopeptidase activity of several indole prenyltransferases from Aspergillus fumigatus.

Authors:  Anika Kremer; Shu-Ming Li
Journal:  Chem Biol       Date:  2008-07-21

6.  Molecular analysis of a 4-dimethylallyltryptophan synthase from Malbranchea aurantiaca.

Authors:  Yousong Ding; Robert M Williams; David H Sherman
Journal:  J Biol Chem       Date:  2008-04-04       Impact factor: 5.157

Review 7.  The ABBA family of aromatic prenyltransferases: broadening natural product diversity.

Authors:  M Tello; T Kuzuyama; L Heide; J P Noel; S B Richard
Journal:  Cell Mol Life Sci       Date:  2008-05       Impact factor: 9.261

8.  Chemoenzymatic syntheses of prenylated aromatic small molecules using Streptomyces prenyltransferases with relaxed substrate specificities.

Authors:  Takuto Kumano; Stéphane B Richard; Joseph P Noel; Makoto Nishiyama; Tomohisa Kuzuyama
Journal:  Bioorg Med Chem       Date:  2008-07-24       Impact factor: 3.641

9.  Searching protein structure databases with DaliLite v.3.

Authors:  L Holm; S Kääriäinen; P Rosenström; A Schenkel
Journal:  Bioinformatics       Date:  2008-09-25       Impact factor: 6.937

10.  A soluble, magnesium-independent prenyltransferase catalyzes reverse and regular C-prenylations and O-prenylations of aromatic substrates.

Authors:  Yvonne Haagen; Inge Unsöld; Lucia Westrich; Bertolt Gust; Stéphane B Richard; Joseph P Noel; Lutz Heide
Journal:  FEBS Lett       Date:  2007-05-22       Impact factor: 4.124

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  61 in total

1.  Identification of the viridicatumtoxin and griseofulvin gene clusters from Penicillium aethiopicum.

Authors:  Yit-Heng Chooi; Ralph Cacho; Yi Tang
Journal:  Chem Biol       Date:  2010-05-28

2.  Expression, purification and crystallization of an indole prenyltransferase from Aspergillus fumigatus.

Authors:  Jing Chen; Hiroyuki Morita; Ryohei Kato; Hiroshi Noguchi; Shigetoshi Sugio; Ikuro Abe
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-02-23

3.  Genome-based characterization of two prenylation steps in the assembly of the stephacidin and notoamide anticancer agents in a marine-derived Aspergillus sp.

Authors:  Yousong Ding; Jeffrey R de Wet; James Cavalcoli; Shengying Li; Thomas J Greshock; Kenneth A Miller; Jennifer M Finefield; James D Sunderhaus; Timothy J McAfoos; Sachiko Tsukamoto; Robert M Williams; David H Sherman
Journal:  J Am Chem Soc       Date:  2010-09-15       Impact factor: 15.419

Review 4.  Structural and functional dissection of aminocoumarin antibiotic biosynthesis: a review.

Authors:  David M Lawson; Clare E M Stevenson
Journal:  J Struct Funct Genomics       Date:  2012-05-27

5.  Discovery and characterization of a group of fungal polycyclic polyketide prenyltransferases.

Authors:  Yit-Heng Chooi; Peng Wang; Jinxu Fang; Yanran Li; Katherine Wu; Pin Wang; Yi Tang
Journal:  J Am Chem Soc       Date:  2012-05-25       Impact factor: 15.419

6.  Biochemical characterization of a novel indole prenyltransferase from Streptomyces sp. SN-593.

Authors:  Shunji Takahashi; Hiroshi Takagi; Atsushi Toyoda; Masakazu Uramoto; Toshihiko Nogawa; Masashi Ueki; Yoshiyuki Sakaki; Hiroyuki Osada
Journal:  J Bacteriol       Date:  2010-03-26       Impact factor: 3.490

7.  Site-directed mutagenesis switching a dimethylallyl tryptophan synthase to a specific tyrosine C3-prenylating enzyme.

Authors:  Aili Fan; Georg Zocher; Edyta Stec; Thilo Stehle; Shu-Ming Li
Journal:  J Biol Chem       Date:  2014-12-04       Impact factor: 5.157

8.  Structural insights into ubiquinone biosynthesis in membranes.

Authors:  Wei Cheng; Weikai Li
Journal:  Science       Date:  2014-02-21       Impact factor: 47.728

9.  Functional characterization of the cyclomarin/cyclomarazine prenyltransferase CymD directs the biosynthesis of unnatural cyclic peptides.

Authors:  Andrew W Schultz; Chad A Lewis; Michael R Luzung; Phil S Baran; Bradley S Moore
Journal:  J Nat Prod       Date:  2010-03-26       Impact factor: 4.050

Review 10.  Terpenoid synthase structures: a so far incomplete view of complex catalysis.

Authors:  Yang Gao; Richard B Honzatko; Reuben J Peters
Journal:  Nat Prod Rep       Date:  2012-08-21       Impact factor: 13.423

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