Literature DB >> 19704736

Centromere structures highlighted by the 100%-complete Cyanidioschyzon merolae genome.

Shinichiro Maruyama1, Motomichi Matsuzaki, Haruko Kuroiwa, Shin-Ya Miyagishima, Kan Tanaka, Tsuneyoshi Kuroiwa, Hisayoshi Nozaki.   

Abstract

Centromere dynamics are largely unknown in lower plants (algae). We have recently identified the centromere-specific histone H3 variant (CENH3) and clarified the dynamic centromere rearrangement at mitosis in the primitive red alga Cyanidioschyzon merolae. We also showed that the CENH3-containing nucleosomes constituted the kinetochore closely interacting with the nuclear envelope. CENH3 visualization during the whole cell cycle suggests that C. merolae centromeres are monocentric and confined to specific loci. We completed 100% no-gap telomereto-telomere sequencing of the C. merolae genome. Interestingly, a single A+T-rich region has been identified on each fully sequenced chromosome. No centromere-like A+T-rich repetitive sequence have been found within these regions, implying that the C. merolae centromeres may be 'point' centromeres, or be comprised of nonrepetitive heterogeneous DNA sequences.

Entities:  

Keywords:  Cyanidioschyzon; centromere; chromosome structure; complete nuclear genome; repetitive DNA

Year:  2008        PMID: 19704736      PMCID: PMC2634006          DOI: 10.4161/psb.3.2.5066

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  11 in total

1.  Centromeric DNA sequences in the pathogenic yeast Candida albicans are all different and unique.

Authors:  Kaustuv Sanyal; Mary Baum; John Carbon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-22       Impact factor: 11.205

2.  Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D.

Authors:  Motomichi Matsuzaki; Osami Misumi; Tadasu Shin-I; Shinichiro Maruyama; Manabu Takahara; Shin-Ya Miyagishima; Toshiyuki Mori; Keiji Nishida; Fumi Yagisawa; Keishin Nishida; Yamato Yoshida; Yoshiki Nishimura; Shunsuke Nakao; Tamaki Kobayashi; Yu Momoyama; Tetsuya Higashiyama; Ayumi Minoda; Masako Sano; Hisayo Nomoto; Kazuko Oishi; Hiroko Hayashi; Fumiko Ohta; Satoko Nishizaka; Shinobu Haga; Sachiko Miura; Tomomi Morishita; Yukihiro Kabeya; Kimihiro Terasawa; Yutaka Suzuki; Yasuyuki Ishii; Shuichi Asakawa; Hiroyoshi Takano; Niji Ohta; Haruko Kuroiwa; Kan Tanaka; Nobuyoshi Shimizu; Sumio Sugano; Naoki Sato; Hisayoshi Nozaki; Naotake Ogasawara; Yuji Kohara; Tsuneyoshi Kuroiwa
Journal:  Nature       Date:  2004-04-08       Impact factor: 49.962

3.  Centromere dynamics in the primitive red alga Cyanidioschyzon merolae.

Authors:  Shinichiro Maruyama; Haruko Kuroiwa; Shin-ya Miyagishima; Kan Tanaka; Tsuneyoshi Kuroiwa
Journal:  Plant J       Date:  2007-02-22       Impact factor: 6.417

4.  Tandem repeats finder: a program to analyze DNA sequences.

Authors:  G Benson
Journal:  Nucleic Acids Res       Date:  1999-01-15       Impact factor: 16.971

5.  Formation of functional centromeric chromatin is specified epigenetically in Candida albicans.

Authors:  Mary Baum; Kaustuv Sanyal; Prashant K Mishra; Nathaniel Thaler; John Carbon
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-26       Impact factor: 11.205

6.  Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.

Authors:  Evelyne Derelle; Conchita Ferraz; Stephane Rombauts; Pierre Rouzé; Alexandra Z Worden; Steven Robbens; Frédéric Partensky; Sven Degroeve; Sophie Echeynié; Richard Cooke; Yvan Saeys; Jan Wuyts; Kamel Jabbari; Chris Bowler; Olivier Panaud; Benoît Piégu; Steven G Ball; Jean-Philippe Ral; François-Yves Bouget; Gwenael Piganeau; Bernard De Baets; André Picard; Michel Delseny; Jacques Demaille; Yves Van de Peer; Hervé Moreau
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-25       Impact factor: 11.205

7.  Evidence on the chromosomal location of centromeric DNA in Plasmodium falciparum from etoposide-mediated topoisomerase-II cleavage.

Authors:  John M Kelly; Louisa McRobert; David A Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-14       Impact factor: 11.205

8.  The minimal eukaryotic ribosomal DNA units in the primitive red alga Cyanidioschyzon merolae.

Authors:  Shinichiro Maruyama; Osami Misumi; Yasuyuki Ishii; Shuichi Asakawa; Atsushi Shimizu; Takashi Sasaki; Motomichi Matsuzaki; Tadasu Shin-i; Hisayoshi Nozaki; Yuji Kohara; Nobuyoshi Shimizu; Tsuneyoshi Kuroiwa
Journal:  DNA Res       Date:  2004-04-30       Impact factor: 4.458

9.  Repetitive DNA is associated with centromeric domains in Trypanosoma brucei but not Trypanosoma cruzi.

Authors:  Samson O Obado; Christopher Bot; Daniel Nilsson; Bjorn Andersson; John M Kelly
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

10.  A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae.

Authors:  Hisayoshi Nozaki; Hiroyoshi Takano; Osami Misumi; Kimihiro Terasawa; Motomichi Matsuzaki; Shinichiro Maruyama; Keiji Nishida; Fumi Yagisawa; Yamato Yoshida; Takayuki Fujiwara; Susumu Takio; Katsunori Tamura; Sung Jin Chung; Soichi Nakamura; Haruko Kuroiwa; Kan Tanaka; Naoki Sato; Tsuneyoshi Kuroiwa
Journal:  BMC Biol       Date:  2007-07-10       Impact factor: 7.431

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  7 in total

Review 1.  Holocentric chromosomes: convergent evolution, meiotic adaptations, and genomic analysis.

Authors:  Daniël P Melters; Leocadia V Paliulis; Ian F Korf; Simon W L Chan
Journal:  Chromosome Res       Date:  2012-07       Impact factor: 5.239

2.  Diatom centromeres suggest a mechanism for nuclear DNA acquisition.

Authors:  Rachel E Diner; Chari M Noddings; Nathan C Lian; Anthony K Kang; Jeffrey B McQuaid; Jelena Jablanovic; Josh L Espinoza; Ngocquynh A Nguyen; Miguel A Anzelmatti; Jakob Jansson; Vincent A Bielinski; Bogumil J Karas; Christopher L Dupont; Andrew E Allen; Philip D Weyman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-03       Impact factor: 11.205

3.  Plant-type trehalose synthetic pathway in cryptosporidium and some other apicomplexans.

Authors:  Yonglan Yu; Haili Zhang; Guan Zhu
Journal:  PLoS One       Date:  2010-09-07       Impact factor: 3.240

4.  Designer diatom episomes delivered by bacterial conjugation.

Authors:  Bogumil J Karas; Rachel E Diner; Stephane C Lefebvre; Jeff McQuaid; Alex P R Phillips; Chari M Noddings; John K Brunson; Ruben E Valas; Thomas J Deerinck; Jelena Jablanovic; Jeroen T F Gillard; Karen Beeri; Mark H Ellisman; John I Glass; Clyde A Hutchison; Hamilton O Smith; J Craig Venter; Andrew E Allen; Christopher L Dupont; Philip D Weyman
Journal:  Nat Commun       Date:  2015-04-21       Impact factor: 14.919

5.  Refinement of the Diatom Episome Maintenance Sequence and Improvement of Conjugation-Based DNA Delivery Methods.

Authors:  Rachel E Diner; Vincent A Bielinski; Christopher L Dupont; Andrew E Allen; Philip D Weyman
Journal:  Front Bioeng Biotechnol       Date:  2016-08-08

6.  Spatiotemporal dynamics of condensins I and II: evolutionary insights from the primitive red alga Cyanidioschyzon merolae.

Authors:  Takayuki Fujiwara; Kan Tanaka; Tsuneyoshi Kuroiwa; Tatsuya Hirano
Journal:  Mol Biol Cell       Date:  2013-06-19       Impact factor: 4.138

7.  Assembly of eukaryotic algal chromosomes in yeast.

Authors:  Bogumil J Karas; Bhuvan Molparia; Jelena Jablanovic; Wolfgang J Hermann; Ying-Chi Lin; Christopher L Dupont; Christian Tagwerker; Isaac T Yonemoto; Vladimir N Noskov; Ray-Yuan Chuang; Andrew E Allen; John I Glass; Clyde A Hutchison; Hamilton O Smith; J Craig Venter; Philip D Weyman
Journal:  J Biol Eng       Date:  2013-12-10       Impact factor: 4.355

  7 in total

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