Literature DB >> 19704512

MicroRNAs in plants: Possible contributions to phenotypic diversity.

Ian M Ehrenreich1, Michael Purugganan.   

Abstract

MicroRNAs (miRNAs) are important posttranscriptional regulators of gene expression in eukaryotes. In plants, most miRNAs exist in multiple copies throughout the genome and many of these miRNAs target multiple messenger RNA (mRNA) transcripts. Mutations at miRNAs in natural populations could facilitate evolutionary changes within and between species because of their positions at critical positions in gene regulatory networks. Dissecting the contribution of miRNAs to plant evolution requires the identification of potentially functional mutations at miRNAs within and between species. Recently, we and others have published papers focused on this topic, laying the foundation for studying the contributions of miRNAs to the phenotypic diversification of plants.

Keywords:  microRNAs; nonconserved miRNAs; plant phenotypic diversity; precursor microRNAs

Year:  2008        PMID: 19704512      PMCID: PMC2634387          DOI: 10.4161/psb.3.10.5914

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  18 in total

Review 1.  The evolutionary dynamics of plant duplicate genes.

Authors:  Richard C Moore; Michael D Purugganan
Journal:  Curr Opin Plant Biol       Date:  2005-04       Impact factor: 7.834

2.  Significant sequence similarities in promoters and precursors of Arabidopsis thaliana non-conserved microRNAs.

Authors:  Yu Wang; Tobias Hindemitt; Klaus F X Mayer
Journal:  Bioinformatics       Date:  2006-08-10       Impact factor: 6.937

3.  The birth and death of microRNA genes in Drosophila.

Authors:  Jian Lu; Yang Shen; Qingfa Wu; Supriya Kumar; Bin He; Suhua Shi; Richard W Carthew; San Ming Wang; Chung-I Wu
Journal:  Nat Genet       Date:  2008-02-17       Impact factor: 38.330

4.  Antiquity of microRNAs and their targets in land plants.

Authors:  Michael J Axtell; David P Bartel
Journal:  Plant Cell       Date:  2005-04-22       Impact factor: 11.277

5.  Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae.

Authors:  Norman Warthmann; Sandip Das; Christa Lanz; Detlef Weigel
Journal:  Mol Biol Evol       Date:  2008-02-22       Impact factor: 16.240

6.  Gene regulation: ancient microRNA target sequences in plants.

Authors:  Sandra K Floyd; John L Bowman
Journal:  Nature       Date:  2004-04-01       Impact factor: 49.962

7.  Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.

Authors:  Richard M Clark; Gabriele Schweikert; Christopher Toomajian; Stephan Ossowski; Georg Zeller; Paul Shinn; Norman Warthmann; Tina T Hu; Glenn Fu; David A Hinds; Huaming Chen; Kelly A Frazer; Daniel H Huson; Bernhard Schölkopf; Magnus Nordborg; Gunnar Rätsch; Joseph R Ecker; Detlef Weigel
Journal:  Science       Date:  2007-07-20       Impact factor: 47.728

8.  Sequence variation of MicroRNAs and their binding sites in Arabidopsis.

Authors:  Ian M Ehrenreich; Michael D Purugganan
Journal:  Plant Physiol       Date:  2008-02-27       Impact factor: 8.340

9.  miRBase: microRNA sequences, targets and gene nomenclature.

Authors:  Sam Griffiths-Jones; Russell J Grocock; Stijn van Dongen; Alex Bateman; Anton J Enright
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

10.  High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes.

Authors:  Noah Fahlgren; Miya D Howell; Kristin D Kasschau; Elisabeth J Chapman; Christopher M Sullivan; Jason S Cumbie; Scott A Givan; Theresa F Law; Sarah R Grant; Jeffery L Dangl; James C Carrington
Journal:  PLoS One       Date:  2007-02-14       Impact factor: 3.240

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  6 in total

Review 1.  Plant and Animal microRNAs (miRNAs) and Their Potential for Inter-kingdom Communication.

Authors:  Yuhai Zhao; Lin Cong; Walter J Lukiw
Journal:  Cell Mol Neurobiol       Date:  2017-09-06       Impact factor: 5.046

2.  Analysis of miRNAs and their targets during adventitious shoot organogenesis of Acacia crassicarpa.

Authors:  Weina Liu; Wangning Yu; Lingyu Hou; Xiaoyu Wang; Fei Zheng; Weixuan Wang; Di Liang; Hailun Yang; Yi Jin; Xiangming Xie
Journal:  PLoS One       Date:  2014-04-09       Impact factor: 3.240

3.  Identification of MicroRNAs and their Targets Associated with Embryo Abortion during Chrysanthemum Cross Breeding via High-Throughput Sequencing.

Authors:  Fengjiao Zhang; Wen Dong; Lulu Huang; Aiping Song; Haibin Wang; Weimin Fang; Fadi Chen; Nianjun Teng
Journal:  PLoS One       Date:  2015-04-24       Impact factor: 3.240

4.  Dynamics of microRNA expression during mouse prenatal development.

Authors:  Sorena Rahmanian; Rabi Murad; Alessandra Breschi; Weihua Zeng; Mark Mackiewicz; Brian Williams; Carrie A Davis; Brian Roberts; Sarah Meadows; Dianna Moore; Diane Trout; Chris Zaleski; Alex Dobin; Lei-Hoon Sei; Jorg Drenkow; Alex Scavelli; Thomas R Gingeras; Barbara J Wold; Richard M Myers; Roderic Guigó; Ali Mortazavi
Journal:  Genome Res       Date:  2019-10-23       Impact factor: 9.043

5.  Biological basis of miRNA action when their targets are located in human protein coding region.

Authors:  Wanjun Gu; Xiaofei Wang; Chuanying Zhai; Tong Zhou; Xueying Xie
Journal:  PLoS One       Date:  2013-05-06       Impact factor: 3.240

6.  Translation Efficiency in Upstream Region of microRNA Targets in Arabidopsis thaliana.

Authors:  Wanjun Gu; Chuanying Zhai; Xiaofei Wang; Xueying Xie; Gurunadh Parinandi; Tong Zhou
Journal:  Evol Bioinform Online       Date:  2012-09-25       Impact factor: 1.625

  6 in total

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