| Literature DB >> 19696935 |
Abstract
The [Pd(DEEN)Cl(2)] and [Entities:
Year: 2009 PMID: 19696935 PMCID: PMC2727661 DOI: 10.1155/2009/512938
Source DB: PubMed Journal: Bioinorg Chem Appl Impact factor: 7.778
Formation constants for complexes of [Pd(DEEN)(H2O)2 ]2+ with amino acids at 37°C and 0.16 M ionic strength.
| Ligand | MLHa | log | Ligand | M L Ha | log |
|---|---|---|---|---|---|
| OH− | 1 0 − 1 | −5.11(0.01) | Glycine | 0 1 1 | 9.20(0.02) |
| 1 0 − 2 | −14.80(0.02) | 0 1 2 | 11.20(0.03) | ||
| 2 0 − 2 | −7.20(0.04) | 1 1 0 | 10.33(0.02) | ||
| Alanine | 0 1 1 | 9.27(0.01) |
| 0 1 1 | 9.12(0.01) |
| 0 1 2 | 12.17(0.02) | 0 1 2 | 11.01(0.03) | ||
| 1 1 0 | 10.16(0.02) | 1 1 0 | 9.86(0.02) | ||
|
| 0 1 1 | 9.63(0.00) |
| 0 1 1 | 9.70(0.02) |
| 0 1 2 | 13.10(0.02) | 0 1 2 | 13.20(0.03) | ||
| 1 1 0 | 7.61(0.02) | 1 1 0 | 9.50(0.02) | ||
| Valine | 0 1 1 | 9.01(0.01) | Proline | 0 1 1 | 10.06(0.01) |
| 0 1 2 | 11.48(0.02) | 0 1 2 | 11.81(0.05) | ||
| 1 1 0 | 9.90(0.03) | 1 1 0 | 10.51(0.10) | ||
| Iso-Leucine | 0 1 1 | 9.46(0.01) | Histamine | 0 1 1 | 9.34(0.01) |
| 0 1 2 | 11.74(0.02) | 0 1 2 | 15.20(0.02) | ||
| 1 1 0 | 10.40(0.02) | 1 1 0 | 12.85(0.08) | ||
| Histidine | 0 1 1 | 8.84(0.01) | Ethanolamine | 0 1 1 | 9.16(0.01) |
| 0 1 2 | 14.74(0.02) | 1 1 0 | 6.99(0.02) | ||
| 0 1 3 | 16.81(0.06) | 1 2 0 | 12.00(0.04) | ||
| 1 1 0 | 13.37(0.01) | 1 1 -1 | 2.01(0.04) | ||
| 1 1 1 | 16.32(0.03) | (pKH = 4.98) | |||
| Serine | 0 1 1 | 8.59(0.01) | Threonine | 0 1 1 | 8.79(0.01) |
| 0 1 2 | 10.95(0.02) | 0 1 2 | 10.85(0.02) | ||
| 1 1 0 | 10.01(0.01) | 1 1 0 | 9.98(0.07) | ||
| 1 1-1 | 2.04(0.02) | 1 1-1 | 2.10(0.08) | ||
| (pKH = 7.97) | (pKH = 7.88) | ||||
| Ornithine | 0 1 1 | 9.81(0.02) | Lysine | 0 1 1 | 9.90(0.02) |
| 0 1 2 | 18.16(0.02) | 0 1 2 | 18.80(0.03) | ||
| 0 1 3 | 20.01(0.03) | 0 1 3 | 21.00(0.03) | ||
| 1 1 0 | 12.90(0.05) | 1 1 0 | 10.12(0.05) | ||
| 1 1 1 | 20.10(0.04) | 1 1 1 | 18.70(0.02) | ||
| Aspartic acid | 0 1 1 | 9.31(0.02) | Glutamic acid | 0 1 1 | 9.34(0.02) |
| 0 1 2 | 12.79(0.03) | 0 1 2 | 13.15(0.03) | ||
| 0 1 3 | 14.50(0.03) | 0 1 3 | 15.73(0.05) | ||
| 1 1 0 | 8.53(0.03) | 1 1 0 | 8.70(0.03) | ||
| 1 1 1 | 11.92(0.04) | 1 1 1 | 11.87(0.02) | ||
| S-methylcysteine methyl ester | 0 1 1 | 8.51(0.02) | Methionine | 0 1 1 | 8.76(0.02) |
| 0 1 2 | 10.40(0.02) | 0 1 2 | 11.00(0.03) | ||
| 1 1 0 | 9.51(0.01) | 1 1 0 | 9.32(0.04) | ||
| Hydroxyproline | 0 1 1 | 9.20(0.01) | Methylamine | 0 1 1 | 9.32(0.01) |
| 0 1 2 | 11.00(0.02) | 1 1 0 | 7.11(0.06) | ||
| 1 1 0 | 9.91(0.03) | 1 2 0 | 12.53(0.04) | ||
| Cysteine | 0 1 1 | 10.00(0.01) | |||
| 0 1 2 | 18.21(0.02) | ||||
| 0 1 3 | 19.62(0.02) | ||||
| 1 1 0 | 14.11(0.03) | ||||
| 18.20(0.04) |
aM, L, and H are the stoichiometric coefficients corresponding to Pd(DEEN), amino acid, and H+, respectively; the coefficient –1, refers to a proton loss.
blog β of Pd(DEEN)-amino acids. Standard deviations are given in parentheses; sum of square of residuals are less than 5E-7, pKH = log β 110 − log β 11-1.
Formation constants for complexes of [Pd(DEEN)(H2 O)2]2+ with peptides, dibasic acids, and DNA units at 37°C and 0.16 M ionic strength.
| Ligand | M L Ha | log | Ligand | M L Ha | log |
|---|---|---|---|---|---|
| Glycinamide | Cyclobutane-1,1- dicarboxylic acid | ||||
| 0 1 1 | 7.50(0.02) | 0 1 1 | 5.37(0.01) | ||
| 1 1 0 | 7.81(0.02) | 0 1 2 | 8.17(0.01) | ||
| 1 1-1 | 4.16(0.01) | 1 1 0 | 6.11(0.02) | ||
| (pKH = 3.65) | 1 1 1 | 7.76(0.05) | |||
| Glycylglycine | Succinic acid | ||||
| 0 1 1 | 7.77(0.01) | 0 1 1 | 5.24(0.02) | ||
| 0 1 2 | 10.81(0.01) | 0 1 2 | 9.17(0.03) | ||
| 1 1 0 | 7.71(0.01) | 1 1 0 | 4.21(0.00) | ||
| 1 1-1 | 2.61(0.08) | 1 1 1 | 9.16(0.01) | ||
| Aspargine | Malonic acid | ||||
| 0 1 1 | 8.35(0.01) | 0 1 1 | 5.01(0.02) | ||
| 0 1 2 | 10.51(0.03) | 0 1 2 | 7.65(0.03) | ||
| 1 1 0 | 9.30(0.02) | 1 1 0 | 5.68(0.02) | ||
| 1 1-1 | −0.50(0.04) | 1 1 1 | 8.15(0.06) | ||
| (pKH = 9.80) | |||||
| Glycylleucine | Adipic Acid | ||||
| 0 1 1 | 7.91(0.01) | 0 1 1 | 5.25(0.03) | ||
| 1 1 0 | 7.35(0.03) | 0 1 2 | 9.14(0.04) | ||
| 1 1-1 | 1.98(0.08) | 1 1 0 | 3.98(0.00) | ||
| (pKH = 5.37) | 1 1 1 | 8.26(0.00) | |||
| Glutamine | Oxalic acid | ||||
| 0 1 1 | 8.77(0.01) | 0 1 1 | 3.76(0.02) | ||
| 0 1 2 | 10.78(0.02) | 0 1 2 | 5.37(0.03) | ||
| 1 1 0 | 9.40(0.02) | 1 1 0 | 5.84(0.07) | ||
| 1 1-1 | −1.40(0.05) | 1 1 1 | 8.06(0.07) | ||
| (pKH =10.80) | |||||
| Inosine | Fumaric acid | ||||
| 0 1 1 | 8.43(0.02) | 0 1 1 | 4.27(0.04) | ||
| 1 1 0 | 7.38(0.03) | 0 1 2 | 6.63(0.04) | ||
| 1 2 0 | 10.64(0.05) | 1 1 0 | 4.23(0.04) | ||
| 1 1 1 | 11.89(0.05) | 1 1 1 | 7.74(0.06) | ||
| Inosine-5′-monophosphate | Cytidine-5′-monophosphate | ||||
| 0 1 1 | 8.83(0.02) | 0 1 1 | 6.12(0.02) | ||
| 0 1 2 | 15.07(0.03) | 0 1 2 | 10.42(0.03) | ||
| 1 1 0 | 8.18(0.03) | 1 1 0 | 5.59(0.07) | ||
| 1 2 0 | 13.35(0.04) | 1 2 0 | 8.37(0.09) | ||
| 1 1 1 | 13.93(0.04) | 1 1 1 | 10.66(0.05) | ||
| Adenine | Uridine-5′-monophosphate | ||||
| 0 1 1 | 9.29(0.03) | 0 1 1 | 9.23(0.01) | ||
| 0 1 2 | 13.32(0.04) | 0 1 2 | 15.12(0.02) | ||
| 1 1 0 | 9.17(0.11) | 1 1 0 | 9.14(0.01) | ||
| 1 2 0 | 13.77(0.02) | 1 2 0 | 13.82(0.02) | ||
| 1 1 1 | 18.36(0.02) | 1 1 1 | 15.15(0.04) | ||
| Cytosine | Uracil | ||||
| 0 1 1 | 4.45(0.02) | 0 1 1 | 8.98(0.01) | ||
| 1 1 0 | 5.68(0.03) | 1 1 0 | 8.33(0.04) | ||
| 1 2 0 | 8.51(0.04) | 1 2 0 | 13.70(0.08) | ||
| Guanosine | Guanosine-5′-monophosphate | ||||
| 0 1 1 | 8.91(0.01) | 0 1 1 | 9.18(0.02) | ||
| 0 1 2 | 11.01(0.02) | 0 1 2 | 15.12(0.03) | ||
| 1 1 0 | 10.18(0.06) | 1 1 0 | 9.03(0.06) | ||
| 1 2 0 | 18.88(0.06) | 1 2 0 | 13.44(0.19) | ||
| 1 1 1 | 15.06(0.01) | ||||
| Adenosine | Thymidine | ||||
| 0 1 1 | 3.40(0.01) | 0 1 1 | 9.28(0.04) | ||
| 1 1 0 | 2.74(0.04) | 1 1 0 | 8.05(0.08) | ||
| 1 2 0 | 5.15(0.00) | 1 2 0 | 13.22(0.04) |
M, L and H are the stoichiometric coefficients corresponding to Pd(DEEN), ligands,and H+, respectively; the coefficient –1 refers to a proton loss.
blog β of Pd(DEEN)- ligands. Standard deviations are given in parentheses; sum of square of residuals are less than 5e −7 , pKH = log β 110 − log β 11-1.
Figure 1Concentration distribution diagram for the hydrolysis of [Pd(DEEN)(H2O)2]2+.
Figure 2Concentration distribution diagram for various complex species in Pd(DEEN)2+-serine system.
Figure 3Concentration distribution diagram for various complex species in Pd(DEEN)2+ -glycylglycine system.
Figure 4Concentration distribution diagram for various complex species in Pd(DEEN)2+-succinic acid System.
Scheme 1Kinetic data for hydrolysis of [Pd(DEEN)(cysteine methyl ester)]2+ at 25°C and 0.1 M ionic strength.
| pH | [OH−]/M | kobs/s−1 |
|---|---|---|
| 8.8 | 7.59E − 06 | 4.95E − 04 |
| 9.0 | 1.20E − 05 | 7.67E − 04 |
| 9.2 | 1.91E − 05 | 1.39E − 03 |
| 9.4 | 3.02E − 05 | 1.88E − 03 |
| 9.6 | 4.79E − 05 | 3.36E − 03 |
Kinetic data for the hydrolysis of [Pd(DEEN)(cysteine methyl ester)]2+ at 25°C and 0.1 M ionic strength.
| kOH | ko | kOH(ester)a | kOH/kOH(ester) |
|---|---|---|---|
| M−1s−1 | s−1 | M−1s−1 | |
|
| |||
| 6.98E + 01 | 9.270E − 07 | 0.767 | 9.10E + 01 |
aData taken from [16, 17]