Literature DB >> 19693406

Size-dependent trajectories of DNA macromolecules due to insulative dielectrophoresis in submicrometer-deep fluidic channels.

Gea O F Parikesit, Anton P Markesteijn, Oana M Piciu, Andre Bossche, Jerry Westerweel, Ian T Young, Yuval Garini.   

Abstract

In this paper, we demonstrate for the first time that insulative dielectrophoresis can induce size-dependent trajectories of DNA macromolecules. We experimentally use lambda (48.5 kbp) and T4GT7 (165.6 kbp) DNA molecules flowing continuously around a sharp corner inside fluidic channels with a depth of 0.4 mum. Numerical simulation of the electrokinetic force distribution inside the channels is in qualitative agreement with our experimentally observed trajectories. We discuss a possible physical mechanism for the DNA polarization and dielectrophoresis inside confining channels, based on the observed dielectrophoresis responses due to different DNA sizes and various electric fields applied between the inlet and the outlet. The proposed physical mechanism indicates that further extensive investigations, both theoretically and experimentally, would be very useful to better elucidate the forces involved at DNA dielectrophoresis. When applied for size-based sorting of DNA molecules, our sorting method offers two major advantages compared to earlier attempts with insulative dielectrophoresis: Its continuous operation allows for high-throughput analysis, and it only requires electric field strengths as low as approximately 10 Vcm.

Year:  2008        PMID: 19693406      PMCID: PMC2719261          DOI: 10.1063/1.2930817

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  16 in total

1.  Electrodeless dielectrophoresis of single- and double-stranded DNA.

Authors:  Chia-Fu Chou; Jonas O Tegenfeldt; Olgica Bakajin; Shirley S Chan; Edward C Cox; Nicholas Darnton; Thomas Duke; Robert H Austin
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

2.  Measurements of scattered light on a microchip flow cytometer with integrated polymer based optical elements.

Authors:  Z Wang; J El-Ali; M Engelund; T Gotsaed; I R Perch-Nielsen; K B Mogensen; D Snakenborg; J P Kutter; A Wolff
Journal:  Lab Chip       Date:  2004-04-20       Impact factor: 6.799

3.  Electrokinetic transport in nanochannels. 2. Experiments.

Authors:  Sumita Pennathur; Juan G Santiago
Journal:  Anal Chem       Date:  2005-11-01       Impact factor: 6.986

4.  Electroosmotic flow analysis of a branched U-turn nanofluidic device.

Authors:  Gea O F Parikesit; Anton P Markesteijn; Vladimir G Kutchoukov; Oana Piciu; Andre Bossche; Jerry Westerweel; Yuval Garini; Ian T Young
Journal:  Lab Chip       Date:  2005-07-18       Impact factor: 6.799

5.  Macrodipoles. Unusual electric properties of biological macromolecules.

Authors:  D Porschke
Journal:  Biophys Chem       Date:  1997-06-30       Impact factor: 2.352

6.  Spontaneous stretching of DNA in a two-dimensional nanoslit.

Authors:  Madhavi Krishnan; Ingolf Mönch; Petra Schwille
Journal:  Nano Lett       Date:  2007-04-17       Impact factor: 11.189

7.  Dielectrophoretic manipulation of DNA: separation and polarizability.

Authors:  Jan Regtmeier; Thanh Tu Duong; Ralf Eichhorn; Dario Anselmetti; Alexandra Ros
Journal:  Anal Chem       Date:  2007-04-20       Impact factor: 6.986

8.  DC-Dielectrophoretic separation of biological cells by size.

Authors:  Yuejun Kang; Dongqing Li; Spyros A Kalams; Josiane E Eid
Journal:  Biomed Microdevices       Date:  2008-04       Impact factor: 2.838

9.  Free-solution oligonucleotide separation in nanoscale channels.

Authors:  Sumita Pennathur; Fabio Baldessari; Juan G Santiago; Michael G Kattah; Jonathan B Steinman; Paul J Utz
Journal:  Anal Chem       Date:  2007-09-21       Impact factor: 6.986

10.  Electrophoresis in nanochannels: brief review and speculation.

Authors:  Fabio Baldessari; Juan G Santiago
Journal:  J Nanobiotechnology       Date:  2006-11-20       Impact factor: 10.435

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  11 in total

1.  Floating-electrode enhanced constriction dielectrophoresis for biomolecular trapping in physiological media of high conductivity.

Authors:  Vasudha Chaurey; Carlos Polanco; Chia-Fu Chou; Nathan S Swami
Journal:  Biomicrofluidics       Date:  2012-03-15       Impact factor: 2.800

2.  Band-broadening suppressed effect in long turned geometry channel and high-sensitive analysis of DNA sample by using floating electrokinetic supercharging on a microchip.

Authors:  Zhongqi Xu; Kenji Murata; Akihiro Arai; Takeshi Hirokawa
Journal:  Biomicrofluidics       Date:  2010-03-12       Impact factor: 2.800

3.  Modeling of dielectrophoretic transport of myoglobin molecules in microchannels.

Authors:  Naga Siva Kumar Gunda; Sushanta Kumar Mitra
Journal:  Biomicrofluidics       Date:  2010-03-01       Impact factor: 2.800

4.  Simulation of electrophoretic stretching of DNA in a microcontraction using an obstacle array for conformational preconditioning.

Authors:  Daniel W Trahan; Patrick S Doyle
Journal:  Biomicrofluidics       Date:  2009-01-07       Impact factor: 2.800

5.  dc electrokinetic transport of cylindrical cells in straight microchannels.

Authors:  Ye Ai; Ali Beskok; David T Gauthier; Sang W Joo; Shizhi Qian
Journal:  Biomicrofluidics       Date:  2009-11-24       Impact factor: 2.800

6.  Dielectrophoretic field-flow method for separating particle populations in a chip with asymmetric electrodes.

Authors:  Ciprian Iliescu; Guillaume Tresset; Guolin Xu
Journal:  Biomicrofluidics       Date:  2009-10-21       Impact factor: 2.800

Review 7.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Authors:  Kevin D Dorfman; Scott B King; Daniel W Olson; Joel D P Thomas; Douglas R Tree
Journal:  Chem Rev       Date:  2012-11-12       Impact factor: 60.622

8.  Interference-Free Detection of Genetic Biomarkers Using Synthetic Dipole-Facilitated Nanopore Dielectrophoresis.

Authors:  Kai Tian; Karl Decker; Aleksei Aksimentiev; Li-Qun Gu
Journal:  ACS Nano       Date:  2017-01-06       Impact factor: 15.881

9.  Microfluidic electromanipulation with capacitive detection for the mechanical analysis of cells.

Authors:  G A Ferrier; A N Hladio; D J Thomson; G E Bridges; M Hedayatipoor; S Olson; M R Freeman
Journal:  Biomicrofluidics       Date:  2008-11-06       Impact factor: 2.800

10.  Dielectrophoretic manipulation of particles in a modified microfluidic H filter with multi-insulating blocks.

Authors:  Nuttawut Lewpiriyawong; Chun Yang; Yee Cheong Lam
Journal:  Biomicrofluidics       Date:  2008-08-11       Impact factor: 2.800

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