| Literature DB >> 19690637 |
James D Birmingham1, Vladimir Vilim, Virginia B Kraus.
Abstract
Entities:
Keywords: ankylosing spondylitis; biomarkers; osteoarthritis; rheumatoid arthritis; type II collagen
Year: 2007 PMID: 19690637 PMCID: PMC2716783
Source DB: PubMed Journal: Biomark Insights ISSN: 1177-2719
Potential Arthritis Biomarkers.
| Type II Collagen Related Epitopes (see |
| Aggrecan Related Epitopes
|
| Hyaluronan |
| Link Protein |
| Cartilage Oligomeric Matrix Protein |
| Cartilage Intermediate Layer Protein |
| Proline Arginine-Rich End Leucine-Rich Protein |
| Decorin |
| Matrix Metalloproteinases |
| Cytokine Profiles |
| C-Reactive Protein |
| Fibromodulin |
| Fibronectin Fragments |
| Human Cartilage Glycoprotein 39 (YKL-40) |
| Glucosyl-Galactosyl-Pyridinoline |
| Peripheral Blood Mononuclear Cell RNA ExpressionProfiles |
| Bone Turnover Biomarkers
|
Currently available biomarkers of type II collagen degradation and synthesis.
| Biomarker Name | AA Sequence | AA Residues | Specificity | Body Fluid or Tissue | Ab | BIPED Classification | References Related to Assay Development |
|---|---|---|---|---|---|---|---|
| Col2-1/4N1 | LAGQRG | 907–912 | Not specified | C | p(Fab)2 | I | ( |
| Col2-1/4N2 | QRGIVG | 910–915 | CII | C | p(Fab)2 | I | ( |
| C1,2C (COL2-3/4Cshort) | GPP(OH)GPQG | 899–906 | CI and CII | S, SF, C | p | P (combined with C2C or CPII), D | ( |
| C2C (COL2-3/4Clong mono) | E
| 898–906 | CII in humans | S, SF, U | m | P (combined with C1,2C Or CPII), E, D | ( |
| uTIINE (5109 and 9A4 ELISA; 5109 capture in LC-MS/MS format) | 888–896/899–906; 862–906 | CII | U | m/m; m/LC-MS/MS | B, P, E, D | ( | |
| COL2-3/4m | APGEDGRPGPPG | 511–522 | CII, CXI | C, S | m | D | ( |
| Coll 2-1
| HRGYPGLDG | 220–228 | CII | S, U | p | P, D | ( |
| Helix-II∞ | ERGETGPP(OH) GTS | 754–764 | CII | U | p | P, D | ( |
| AH12 | GAPGPQGFQGNPGEPGEPGVS | 147–167 | CII | C | p | I | ( |
| AH8 | GPPGPPGKPGDDGEAGKPGKA | 174–194 | CII | C | m and p | I | ( |
| AH9 | GPP(OH)GP RGRSGETGPAGPP(OH)GNP(OH) | 1116–1136 | CII | C | p | I | ( |
| CII CNBr9.7 (18:6:D6 and 14:7:D8 ELISA) | Epitope within CNBr 9.7/GPQGPRGDKGEAGEP | 1028–1151/1041–1055 | CII/CI, CII, CIII, CV | SF | m/m | D | ( |
| col2CTx | (R)EKGPDP | 1160–1166 | CII cross-links | C, S, P(EDTA), SF, U | m, m/m | B, P, E, D | ( |
| CPII PIICP (chondrocalcin) | Sequence within C-propeptide: DQAAGGLR Q…DIGPVCFL | 1173–1418 (of procollagen IIB in | CII | S, SF, C | p p/p | B, P, E, D | ( |
| PIIANP | QEAGSCVQDG QRYNDKDVW KPE PCRICVCDTGT VLCDDIICEDV KDCLSPEIPFG ECCPICPTDLA TAS | 29–97 (of procollagen IIA in | CII | S (not plasma) | p | P (combined with uCTXII), E, D | ( |
The biomarker name is the usual one in the literature and does not discriminate if it applies to an antibody, an epitope, or an assay name.
Categories are based on localization of an epitope in the type II collagen molecule and residue numbering is based on the human type II collagen sequence, P024588 in UniProtKB/Swiss sequence shown in Figure 1a:
-Cleavage neoepitopes localized to the collagenase cleavage site between Gly906 and Leu907
-Denaturation neoepitopes localized to the triple-helical domain
-Epitopes localized to the telopeptides
-Collagen synthesis epitopes localized to the N-propeptide domain (AA 26–112) or C-propeptide domain (AA 1173–1418).
CII = type II collagen; CI = type I collagen; CIX = type IX collagen.
The table shows human body fluid or tissue for which the application of the assay is documented in the literature: S = serum; SF = synovial fluid; U = urine; C = cartilage explant.
m - monoclonal antibody (mAb), p - polyclonal antiserum, m/m - a sandwich of two mAbs, LC-MS/MS - liquid chromatography with mass spectroscopy.
Provisional BIPED classification categories based on Bauer et al. (Bauer et al. 2006): B = burden of disease; I = investigative; P = prognostic; E = efficacy of intervention; D = diagnostic marker.
The antibodies to Col2CTx and CTX-II are specific for a peptide that happens to be present in the cross-linked structure in human body fluids but the cross-link is not a part of the epitope.
Figure 1aAmino acid sequence in α1(II) chain of human procollagen type IIB (COL2A1_HUMAN, P02458, UniProtKB/Swiss). Numbering of amino acids in this figure (and throughout the whole text of this review) is consistent with numbering in the source given above and may not correspond to numbering in a particular reference. Numbering used here includes N-terminal signal peptide and N-propeptide, and does not include the alternatively spliced block of 69 amino acids in the N-propeptide (which is shown in Figure 1b). Each number corresponds to the last one of ten amino acids under it.
- Tandems Proline/Hydroxyproline and Lysine/Hydroxylysine are not distinguished and are represented by the same letter (P and K, respectively).
- Positions of cross-links are color-coded and underlined (K121, 239, 1061, and 1162).
- The telopeptides (in red lettering) and epitopes discussed in this review is as follows:
113–131 N-terminal non-helical domain (N-terminal telopeptide)
1146–1172 C-terminal non-helical domain (C-terminal telopeptide)
132–1145 Triple-helical domain
1173–1418 Carboxy-terminal propeptide domain
26–112 Amino-terminal propeptide domain
Figure 2The sequence of the cross-linked Col2CTx epitope. The crosslinked structure of this telopeptide biomarker, indicative of type II collagen degradation, enables it to survive to urine. The cross-link designated as Hyl-Hyl-Hyl is hydroxylysylpyridinoline.