Literature DB >> 19684890

Impact of the next generation DNA sequencers.

Kikuya Kato1.   

Abstract

New generation sequencers have been developed with a strong impact on genomics. These sequencers are based on a principle different from the Sanger method, and can sequence one to several million templates in a single run, albeit read length is relatively small. The current large-scale efforts are: 1) complete genome sequencing of 1,000 individuals, the primary objective of which is identification of rare SNP variants, not identified by the international HapMap project; 2) large-scale sequencing of cancer genomes to construct a complete catalog of genomic changes. These sequencers are also being applied in the identification of new infectious agents. Steady increase in data production capacity and decrease of cost will definitely make the sequencers a powerful diagnostic tool, especially for screening of all genetic diseases. On the contrary, statistical problems inherent to large data sets need to be solved before application to specific problems in medical science.

Entities:  

Keywords:  Massive parallel analysis; the 1000 genomes project; the cancer genome atlas

Year:  2009        PMID: 19684890      PMCID: PMC2719707     

Source DB:  PubMed          Journal:  Int J Clin Exp Med        ISSN: 1940-5901


  33 in total

1.  Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays.

Authors:  S Brenner; M Johnson; J Bridgham; G Golda; D H Lloyd; D Johnson; S Luo; S McCurdy; M Foy; M Ewan; R Roth; D George; S Eletr; G Albrecht; E Vermaas; S R Williams; K Moon; T Burcham; M Pallas; R B DuBridge; J Kirchner; K Fearon; J Mao; K Corcoran
Journal:  Nat Biotechnol       Date:  2000-06       Impact factor: 54.908

2.  Is anticancer drug development heading in the right direction?

Authors:  Trevor W Hambley; William N Hait
Journal:  Cancer Res       Date:  2009-02-10       Impact factor: 12.701

3.  Common genetic variation and human traits.

Authors:  David B Goldstein
Journal:  N Engl J Med       Date:  2009-04-15       Impact factor: 91.245

4.  Genetic risk prediction--are we there yet?

Authors:  Peter Kraft; David J Hunter
Journal:  N Engl J Med       Date:  2009-04-15       Impact factor: 91.245

5.  The diploid genome sequence of an Asian individual.

Authors:  Jun Wang; Wei Wang; Ruiqiang Li; Yingrui Li; Geng Tian; Laurie Goodman; Wei Fan; Junqing Zhang; Jun Li; Juanbin Zhang; Yiran Guo; Binxiao Feng; Heng Li; Yao Lu; Xiaodong Fang; Huiqing Liang; Zhenglin Du; Dong Li; Yiqing Zhao; Yujie Hu; Zhenzhen Yang; Hancheng Zheng; Ines Hellmann; Michael Inouye; John Pool; Xin Yi; Jing Zhao; Jinjie Duan; Yan Zhou; Junjie Qin; Lijia Ma; Guoqing Li; Zhentao Yang; Guojie Zhang; Bin Yang; Chang Yu; Fang Liang; Wenjie Li; Shaochuan Li; Dawei Li; Peixiang Ni; Jue Ruan; Qibin Li; Hongmei Zhu; Dongyuan Liu; Zhike Lu; Ning Li; Guangwu Guo; Jianguo Zhang; Jia Ye; Lin Fang; Qin Hao; Quan Chen; Yu Liang; Yeyang Su; A San; Cuo Ping; Shuang Yang; Fang Chen; Li Li; Ke Zhou; Hongkun Zheng; Yuanyuan Ren; Ling Yang; Yang Gao; Guohua Yang; Zhuo Li; Xiaoli Feng; Karsten Kristiansen; Gane Ka-Shu Wong; Rasmus Nielsen; Richard Durbin; Lars Bolund; Xiuqing Zhang; Songgang Li; Huanming Yang; Jian Wang
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962

6.  Exomic sequencing identifies PALB2 as a pancreatic cancer susceptibility gene.

Authors:  Siân Jones; Ralph H Hruban; Mihoko Kamiyama; Michael Borges; Xiaosong Zhang; D Williams Parsons; Jimmy Cheng-Ho Lin; Emily Palmisano; Kieran Brune; Elizabeth M Jaffee; Christine A Iacobuzio-Donahue; Anirban Maitra; Giovanni Parmigiani; Scott E Kern; Victor E Velculescu; Kenneth W Kinzler; Bert Vogelstein; James R Eshleman; Michael Goggins; Alison P Klein
Journal:  Science       Date:  2009-03-05       Impact factor: 47.728

Review 7.  Targeted cancer therapeutics.

Authors:  William N Hait; Trevor W Hambley
Journal:  Cancer Res       Date:  2009-02-10       Impact factor: 12.701

8.  Real-time DNA sequencing from single polymerase molecules.

Authors:  John Eid; Adrian Fehr; Jeremy Gray; Khai Luong; John Lyle; Geoff Otto; Paul Peluso; David Rank; Primo Baybayan; Brad Bettman; Arkadiusz Bibillo; Keith Bjornson; Bidhan Chaudhuri; Frederick Christians; Ronald Cicero; Sonya Clark; Ravindra Dalal; Alex Dewinter; John Dixon; Mathieu Foquet; Alfred Gaertner; Paul Hardenbol; Cheryl Heiner; Kevin Hester; David Holden; Gregory Kearns; Xiangxu Kong; Ronald Kuse; Yves Lacroix; Steven Lin; Paul Lundquist; Congcong Ma; Patrick Marks; Mark Maxham; Devon Murphy; Insil Park; Thang Pham; Michael Phillips; Joy Roy; Robert Sebra; Gene Shen; Jon Sorenson; Austin Tomaney; Kevin Travers; Mark Trulson; John Vieceli; Jeffrey Wegener; Dawn Wu; Alicia Yang; Denis Zaccarin; Peter Zhao; Frank Zhong; Jonas Korlach; Stephen Turner
Journal:  Science       Date:  2008-11-20       Impact factor: 47.728

9.  DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome.

Authors:  Timothy J Ley; Elaine R Mardis; Li Ding; Bob Fulton; Michael D McLellan; Ken Chen; David Dooling; Brian H Dunford-Shore; Sean McGrath; Matthew Hickenbotham; Lisa Cook; Rachel Abbott; David E Larson; Dan C Koboldt; Craig Pohl; Scott Smith; Amy Hawkins; Scott Abbott; Devin Locke; Ladeana W Hillier; Tracie Miner; Lucinda Fulton; Vincent Magrini; Todd Wylie; Jarret Glasscock; Joshua Conyers; Nathan Sander; Xiaoqi Shi; John R Osborne; Patrick Minx; David Gordon; Asif Chinwalla; Yu Zhao; Rhonda E Ries; Jacqueline E Payton; Peter Westervelt; Michael H Tomasson; Mark Watson; Jack Baty; Jennifer Ivanovich; Sharon Heath; William D Shannon; Rakesh Nagarajan; Matthew J Walter; Daniel C Link; Timothy A Graubert; John F DiPersio; Richard K Wilson
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962

10.  Evaluation of next generation sequencing platforms for population targeted sequencing studies.

Authors:  Olivier Harismendy; Pauline C Ng; Robert L Strausberg; Xiaoyun Wang; Timothy B Stockwell; Karen Y Beeson; Nicholas J Schork; Sarah S Murray; Eric J Topol; Samuel Levy; Kelly A Frazer
Journal:  Genome Biol       Date:  2009-03-27       Impact factor: 13.583

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  3 in total

1.  Genetic predisposition of stroke: understanding the evolving landscape through meta-analysis.

Authors:  Hai-Dong Huang; Chun-Min Yang; Hai-Feng Shu; Yong-Qin Kuang; Tao Yang; Wei-Qi He; Kai Zhao; Xun Xia; Jing-Min Cheng; Yuan Ma; Jian-Wen Gu
Journal:  Int J Clin Exp Med       Date:  2015-01-15

2.  Genetic and epigenetic characteristics of human multiple hepatocellular carcinoma.

Authors:  Kazuya Taniguchi; Terumasa Yamada; Yo Sasaki; Kikuya Kato
Journal:  BMC Cancer       Date:  2010-10-06       Impact factor: 4.430

3.  Reinventing diagnostics for personalized therapy in oncology.

Authors:  Diponkar Banerjee
Journal:  Cancers (Basel)       Date:  2010-06-02       Impact factor: 6.639

  3 in total

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