Literature DB >> 19683499

yFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement.

Hua Xin1, Shinya Takahata, Mary Blanksma, Laura McCullough, David J Stillman, Tim Formosa.   

Abstract

FACT has been proposed to function by displacing H2A-H2B dimers from nucleosomes to form hexasomes. Results described here with yeast FACT (yFACT) suggest instead that nucleosomes are reorganized to a form with the original composition but a looser, more dynamic structure. First, yFACT enhances hydroxyl radical accessibility and endonuclease digestion in vitro at sites throughout the nucleosome, not just in regions contacted by H2A-H2B. Accessibility increases dramatically, but the DNA remains partially protected. Second, increased nuclease sensitivity can occur without displacement of dimers from the nucleosome. Third, yFACT is required for eviction of nucleosomes from the GAL1-10 promoter during transcriptional activation in vivo, but the preferential reduction in dimer occupancy expected for hexasome formation is not observed. We propose that yFACT promotes a reversible transition between two nucleosomal forms, and that this activity contributes to the establishment and maintenance of the chromatin barrier as well as to overcoming it.

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Year:  2009        PMID: 19683499      PMCID: PMC2748400          DOI: 10.1016/j.molcel.2009.06.024

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  31 in total

1.  Opposing roles for Set2 and yFACT in regulating TBP binding at promoters.

Authors:  Debabrata Biswas; Rinku Dutta-Biswas; Doyel Mitra; Yoichiro Shibata; Brian D Strahl; Tim Formosa; David J Stillman
Journal:  EMBO J       Date:  2006-09-14       Impact factor: 11.598

Review 2.  Transcriptional regulation by chromatin disassembly and reassembly.

Authors:  Stephanie K Williams; Jessica K Tyler
Journal:  Curr Opin Genet Dev       Date:  2007-02-20       Impact factor: 5.578

3.  FACT-mediated exchange of histone variant H2AX regulated by phosphorylation of H2AX and ADP-ribosylation of Spt16.

Authors:  Kyu Heo; Hyunjung Kim; Si Ho Choi; Jongkyu Choi; Kyunghwan Kim; Jiafeng Gu; Michael R Lieber; Allen S Yang; Woojin An
Journal:  Mol Cell       Date:  2008-04-11       Impact factor: 17.970

4.  The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins.

Authors:  G Orphanides; W H Wu; W S Lane; M Hampsey; D Reinberg
Journal:  Nature       Date:  1999-07-15       Impact factor: 49.962

Review 5.  de FACTo nucleosome dynamics.

Authors:  Danny Reinberg; Robert J Sims
Journal:  J Biol Chem       Date:  2006-06-09       Impact factor: 5.157

6.  Spt16 and Pob3 of Saccharomyces cerevisiae form an essential, abundant heterodimer that is nuclear, chromatin-associated, and copurifies with DNA polymerase alpha.

Authors:  J Wittmeyer; L Joss; T Formosa
Journal:  Biochemistry       Date:  1999-07-13       Impact factor: 3.162

7.  The yeast FACT complex has a role in transcriptional initiation.

Authors:  Debabrata Biswas; Yaxin Yu; Matthew Prall; Tim Formosa; David J Stillman
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

8.  Evidence that the localization of the elongation factor Spt16 across transcribed genes is dependent upon histone H3 integrity in Saccharomyces cerevisiae.

Authors:  Andrea A Duina; Anne Rufiange; John Bracey; Jeffrey Hall; Amine Nourani; Fred Winston
Journal:  Genetics       Date:  2007-07-01       Impact factor: 4.562

9.  Structural and functional analysis of the Spt16p N-terminal domain reveals overlapping roles of yFACT subunits.

Authors:  Andrew P VanDemark; Hua Xin; Laura McCullough; Robert Rawlins; Shayla Bentley; Annie Heroux; David J Stillman; Christopher P Hill; Tim Formosa
Journal:  J Biol Chem       Date:  2007-12-18       Impact factor: 5.157

Review 10.  Chromatin remodeling: insights and intrigue from single-molecule studies.

Authors:  Bradley R Cairns
Journal:  Nat Struct Mol Biol       Date:  2007-11       Impact factor: 15.369

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  106 in total

1.  The role of the transcript elongation factors FACT and HUB1 in leaf growth and the induction of flowering.

Authors:  Mieke Van Lijsebettens; Klaus D Grasser
Journal:  Plant Signal Behav       Date:  2010-06-01

2.  The nucleosome acidic patch directly interacts with subunits of the Paf1 and FACT complexes and controls chromatin architecture in vivo.

Authors:  Christine E Cucinotta; A Elizabeth Hildreth; Brendan M McShane; Margaret K Shirra; Karen M Arndt
Journal:  Nucleic Acids Res       Date:  2019-09-19       Impact factor: 16.971

3.  The histone chaperone facilitates chromatin transcription (FACT) protein maintains normal replication fork rates.

Authors:  Takuya Abe; Kazuto Sugimura; Yoshifumi Hosono; Yasunari Takami; Motomu Akita; Akari Yoshimura; Shusuke Tada; Tatsuo Nakayama; Hiromu Murofushi; Katsuzumi Okumura; Shunichi Takeda; Masami Horikoshi; Masayuki Seki; Takemi Enomoto
Journal:  J Biol Chem       Date:  2011-07-07       Impact factor: 5.157

4.  Structure and biological importance of the Spn1-Spt6 interaction, and its regulatory role in nucleosome binding.

Authors:  Seth M McDonald; Devin Close; Hua Xin; Tim Formosa; Christopher P Hill
Journal:  Mol Cell       Date:  2010-11-25       Impact factor: 17.970

5.  Phosphorylation-coupled intramolecular dynamics of unstructured regions in chromatin remodeler FACT.

Authors:  Manami Hashimoto; Noriyuki Kodera; Yasuo Tsunaka; Masayuki Oda; Mitsuru Tanimoto; Toshio Ando; Kosuke Morikawa; Shin-ichi Tate
Journal:  Biophys J       Date:  2013-05-21       Impact factor: 4.033

6.  FACT and the H2B N tail.

Authors:  Mary Ann Osley
Journal:  Mol Cell Biol       Date:  2013-11-25       Impact factor: 4.272

7.  A highly conserved region within H2B is important for FACT to act on nucleosomes.

Authors:  Suting Zheng; J Brooks Crickard; Abhinaya Srikanth; Joseph C Reese
Journal:  Mol Cell Biol       Date:  2013-11-18       Impact factor: 4.272

8.  Structural basis of histone H2A-H2B recognition by the essential chaperone FACT.

Authors:  Maria Hondele; Tobias Stuwe; Markus Hassler; Felix Halbach; Andrew Bowman; Elisa T Zhang; Bianca Nijmeijer; Christiane Kotthoff; Vladimir Rybin; Stefan Amlacher; Ed Hurt; Andreas G Ladurner
Journal:  Nature       Date:  2013-05-22       Impact factor: 49.962

9.  Establishment of Centromeric Chromatin by the CENP-A Assembly Factor CAL1 Requires FACT-Mediated Transcription.

Authors:  Chin-Chi Chen; Sarion Bowers; Zoltan Lipinszki; Jason Palladino; Sarah Trusiak; Emily Bettini; Leah Rosin; Marcin R Przewloka; David M Glover; Rachel J O'Neill; Barbara G Mellone
Journal:  Dev Cell       Date:  2015-07-06       Impact factor: 12.270

10.  ASH2L regulates ubiquitylation signaling to MLL: trans-regulation of H3 K4 methylation in higher eukaryotes.

Authors:  Lipeng Wu; Shirley Y Lee; Bo Zhou; Uyen T T Nguyen; Tom W Muir; Song Tan; Yali Dou
Journal:  Mol Cell       Date:  2013-02-28       Impact factor: 17.970

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