Literature DB >> 19682593

Transcriptomics: unravelling the biology of transcription factors and chromatin remodelers during development and differentiation.

Gerard L Brien1, Adrian P Bracken.   

Abstract

Mammalian development is a highly complex and tightly regulated process. Transcription factors and chromatin remodelers, acting downstream of cell signalling pathways, are the key intrinsic factors which control gene expression. Recent advances in transcriptomics are allowing biologists to begin to unravel the complex biological roles played by these factors. This review focuses on how genome-wide gene expression and chromatin immunoprecipitation studies are expanding our understanding of the roles played by transcription factors and chromatin remodelers during cell fate decisions in development and differentiation.

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Year:  2009        PMID: 19682593     DOI: 10.1016/j.semcdb.2009.07.010

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  8 in total

1.  The transcription factor Atonal homolog 8 regulates Gata4 and Friend of Gata-2 during vertebrate development.

Authors:  David R Rawnsley; Jiping Xiao; John S Lee; Xi Liu; Patricia Mericko-Ishizuka; Vinayak Kumar; Jie He; Arindam Basu; MinMin Lu; Francis C Lynn; Michael Pack; Rosa Gasa; Mark L Kahn
Journal:  J Biol Chem       Date:  2013-07-08       Impact factor: 5.157

Review 2.  Proteomics and pluripotency.

Authors:  Justin Brumbaugh; Christopher M Rose; Douglas H Phanstiel; James A Thomson; Joshua J Coon
Journal:  Crit Rev Biochem Mol Biol       Date:  2011-10-15       Impact factor: 8.250

Review 3.  Genome maintenance in the context of 4D chromatin condensation.

Authors:  Sonia Yu; Fan Yang; Wen H Shen
Journal:  Cell Mol Life Sci       Date:  2016-04-20       Impact factor: 9.261

4.  Chromatin-associated proteins HP1 and Mod(mdg4) modify Y-linked regulatory variation in the drosophila testis.

Authors:  Alan T Branco; Daniel L Hartl; Bernardo Lemos
Journal:  Genetics       Date:  2013-05-01       Impact factor: 4.562

Review 5.  Exploiting the Epigenome to Control Cancer-Promoting Gene-Expression Programs.

Authors:  Gerard L Brien; Daria G Valerio; Scott A Armstrong
Journal:  Cancer Cell       Date:  2016-04-11       Impact factor: 31.743

6.  A simple method for gene expression and chromatin profiling of individual cell types within a tissue.

Authors:  Roger B Deal; Steven Henikoff
Journal:  Dev Cell       Date:  2010-06-15       Impact factor: 12.270

Review 7.  Epigenetic reprogramming of host genes in viral and microbial pathogenesis.

Authors:  Konstantinos Paschos; Martin J Allday
Journal:  Trends Microbiol       Date:  2010-08-18       Impact factor: 17.079

8.  An Integrated Statistical Approach to Compare Transcriptomics Data Across Experiments: A Case Study on the Identification of Candidate Target Genes of the Transcription Factor PPARα.

Authors:  Mohammad Ohid Ullah; Michael Müller; Guido J E J Hooiveld
Journal:  Bioinform Biol Insights       Date:  2012-06-19
  8 in total

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