Literature DB >> 19680245

From small reads do mighty genomes grow.

Nicholas J Croucher1.   

Abstract

This month's Genome Watch discusses the use of next-generation sequencing technologies to assemble draft genomes for two pseudomonad species.

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Substances：

Year:  2009        PMID： 19680245     DOI： 10.1038/nrmicro2211

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN： 1740-1526            Impact factor:   60.633


  3 in total

1.  High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi.

Authors:  Kathryn E Holt; Julian Parkhill; Camila J Mazzoni; Philippe Roumagnac; François-Xavier Weill; Ian Goodhead; Richard Rance; Stephen Baker; Duncan J Maskell; John Wain; Christiane Dolecek; Mark Achtman; Gordon Dougan
Journal:  Nat Genet       Date:  2008-07-27       Impact factor: 38.330

2.  De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae.

Authors:  Josephine A Reinhardt; David A Baltrus; Marc T Nishimura; William R Jeck; Corbin D Jones; Jeffery L Dangl
Journal:  Genome Res       Date:  2008-11-17       Impact factor: 9.043

3.  Gene-boosted assembly of a novel bacterial genome from very short reads.

Authors:  Steven L Salzberg; Daniel D Sommer; Daniela Puiu; Vincent T Lee
Journal:  PLoS Comput Biol       Date:  2008-09-26       Impact factor: 4.475
  3 in total
  3 in total

1.  Crystal structure of chiral gammaPNA with complementary DNA strand: insights into the stability and specificity of recognition and conformational preorganization.

Authors:  Joanne I Yeh; Boris Shivachev; Srinivas Rapireddy; Matthew J Crawford; Roberto R Gil; Shoucheng Du; Marcela Madrid; Danith H Ly
Journal:  J Am Chem Soc       Date:  2010-08-11       Impact factor: 15.419

2.  De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads.

Authors:  Harish Nagarajan; Jessica E Butler; Anna Klimes; Yu Qiu; Karsten Zengler; Joy Ward; Nelson D Young; Barbara A Methé; Bernhard Ø Palsson; Derek R Lovley; Christian L Barrett
Journal:  PLoS One       Date:  2010-06-08       Impact factor: 3.240

3.  Optimal reference sequence selection for genome assembly using minimum description length principle.

Authors:  Bilal Wajid; Erchin Serpedin; Mohamed Nounou; Hazem Nounou
Journal:  EURASIP J Bioinform Syst Biol       Date:  2012-11-27
  3 in total

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