Literature DB >> 19678666

Intramolecular cooperativity in the reaction of diacyl phosphates with serine beta-lactamases.

Sudipta Majumdar1, R F Pratt.   

Abstract

Asymmetric diaroyl phosphates (ArCOOPO(2)(-)OCOAr', where Ar = Ph, Ar' = 4-biphenyl, 2-benzothiophenyl and 2-benzofuranyl) have been prepared, evaluated as serine (classes A, C, and D) beta-lactamase inhibitors, and compared with respect to the latter with their symmetric parents, where Ar = Ar'. The asymmetric compounds, in general, were found to react with the beta-lactamases in two modes, corresponding to different orientations with respect to the active site, whereby either of the two aroyl groups may acylate the enzyme to form two different inert acyl-enzymes, E-COAr and E-COAr' . In all cases, the asymmetric compounds, in one orientation, react more rapidly with the enzymes tested than one symmetrical parent but not both. From comparisons of activation free energy differences, it was found that the changes in free energy on changing from one aryl group to another, in either the acyl group or the leaving group, were not additive, i.e., that the effect of changing one aroyl group to another depended on the leaving group and vice versa. Thus, intramolecular cooperativity between the aroyl groups must exist, arising either from direct interaction between them or from protein-mediated interaction or from a combination of both. Such cooperativity brings fresh opportunities and challenges to the search for novel beta-lactamase inhibitors.

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Year:  2009        PMID: 19678666      PMCID: PMC2885897          DOI: 10.1021/bi900808x

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Mechanism of reaction of acyl phosph(on)ates with the beta-lactamase of Enterobacter cloacae P99.

Authors:  K Kaur; R F Pratt
Journal:  Biochemistry       Date:  2001-04-17       Impact factor: 3.162

2.  The specificity of chymotrypsin. A statistical analysis of hydrolysis data.

Authors:  V Schellenberger; K Braune; H J Hofmann; H D Jakubke
Journal:  Eur J Biochem       Date:  1991-08-01

3.  Inverse acyl phosph(on)ates: substrates or inhibitors of beta-lactam-recognizing enzymes?

Authors:  M J Morrison; N Li; R F Pratt
Journal:  Bioorg Chem       Date:  2001-10       Impact factor: 5.275

4.  Inhibition of class D beta-lactamases by diaroyl phosphates.

Authors:  Sudipta Majumdar; S A Adediran; Michiyoshi Nukaga; R F Pratt
Journal:  Biochemistry       Date:  2005-12-13       Impact factor: 3.162

5.  Studies of the cellulolytic system of Trichoderma reesei QM 9414. Binding of small ligands to the 1,4-beta-glucan cellobiohydrolase II and influence of glucose on their affinity.

Authors:  H Van Tilbeurgh; F G Loontiens; Y Engelborgs; M Claeyssens
Journal:  Eur J Biochem       Date:  1989-10-01

6.  Characterization of the S'-subsite specificity of bovine pancreatic alpha-chymotrypsin via acyl transfer to added nucleophiles.

Authors:  V Schellenberger; U Schellenberger; Y V Mitin; H D Jakubke
Journal:  Eur J Biochem       Date:  1990-01-12

7.  Structure-based enhancement of boronic acid-based inhibitors of AmpC beta-lactamase.

Authors:  G S Weston; J Blázquez; F Baquero; B K Shoichet
Journal:  J Med Chem       Date:  1998-11-05       Impact factor: 7.446

8.  Kinetic and structural consequences of the leaving group in substrates of a class C beta-lactamase.

Authors:  Yong-Mo Ahn; R F Pratt
Journal:  Bioorg Med Chem       Date:  2004-03-15       Impact factor: 3.641

9.  Inhibition of class A and C beta-lactamases by diaroyl phosphates.

Authors:  Sudipta Majumdar; R F Pratt
Journal:  Biochemistry       Date:  2009-09-08       Impact factor: 3.162

10.  Cooperativity of papain-substrate interaction energies in the S2 to S2' subsites.

Authors:  P J Berti; C H Faerman; A C Storer
Journal:  Biochemistry       Date:  1991-02-05       Impact factor: 3.162

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  3 in total

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Authors:  Liudmila Dzhekieva; S A Adediran; Raphael Herman; Frédéric Kerff; Colette Duez; Paulette Charlier; Eric Sauvage; R F Pratt
Journal:  Biochemistry       Date:  2013-03-13       Impact factor: 3.162

Review 2.  Three decades of beta-lactamase inhibitors.

Authors:  Sarah M Drawz; Robert A Bonomo
Journal:  Clin Microbiol Rev       Date:  2010-01       Impact factor: 26.132

Review 3.  Genetic basis of molecular mechanisms in β-lactam resistant gram-negative bacteria.

Authors:  Hafiz Iftikhar Hussain; Amjad Islam Aqib; Mohamed N Seleem; Muhammad Abubakar Shabbir; Haihong Hao; Zahid Iqbal; Muhammad Fakhar-E-Alam Kulyar; Tean Zaheer; Kun Li
Journal:  Microb Pathog       Date:  2021-06-10       Impact factor: 3.738

  3 in total

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