Literature DB >> 19670286

Multi-component analysis: blind extraction of pure components mass spectra using sparse component analysis.

Ivica Kopriva1, Ivanka Jerić.   

Abstract

The paper presents sparse component analysis (SCA)-based blind decomposition of the mixtures of mass spectra into pure components, wherein the number of mixtures is less than number of pure components. Standard solutions of the related blind source separation (BSS) problem that are published in the open literature require the number of mixtures to be greater than or equal to the unknown number of pure components. Specifically, we have demonstrated experimentally the capability of the SCA to blindly extract five pure components mass spectra from two mixtures only. Two approaches to SCA are tested: the first one based on l(1) norm minimization implemented through linear programming and the second one implemented through multilayer hierarchical alternating least square nonnegative matrix factorization with sparseness constraints imposed on pure components spectra. In contrast to many existing blind decomposition methods no a priori information about the number of pure components is required. It is estimated from the mixtures using robust data clustering algorithm together with pure components concentration matrix. Proposed methodology can be implemented as a part of software packages used for the analysis of mass spectra and identification of chemical compounds. 2009 John Wiley & Sons, Ltd.

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Year:  2009        PMID: 19670286     DOI: 10.1002/jms.1627

Source DB:  PubMed          Journal:  J Mass Spectrom        ISSN: 1076-5174            Impact factor:   1.982


  2 in total

1.  A mixture model with a reference-based automatic selection of components for disease classification from protein and/or gene expression levels.

Authors:  Ivica Kopriva; Marko Filipović
Journal:  BMC Bioinformatics       Date:  2011-12-30       Impact factor: 3.169

2.  Automated Interpretation and Extraction of Topographic Information from Time of Flight Secondary Ion Mass Spectrometry Data.

Authors:  Anton V Ievlev; Alexei Belianinov; Stephen Jesse; David P Allison; Mitchel J Doktycz; Scott T Retterer; Sergei V Kalinin; Olga S Ovchinnikova
Journal:  Sci Rep       Date:  2017-12-06       Impact factor: 4.379

  2 in total

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