Literature DB >> 19669520

Superdiffusion in a model for diffusion in a molecularly crowded environment.

Dietrich Stauffer1, Christian Schulze, Dieter W Heermann.   

Abstract

We present a model for diffusion in a molecularly crowded environment. The model consists of random barriers in a percolation network. Random walks in the presence of slowly moving barriers show normal diffusion for long times but anomalous diffusion at intermediate times. The effective exponents for square distance vs time usually are below one at these intermediate times, but they can also be larger than one for high barrier concentrations. Thus, we observe sub- and superdiffusion in a crowded environment.

Year:  2008        PMID: 19669520      PMCID: PMC2646401          DOI: 10.1007/s10867-008-9075-2

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  8 in total

1.  Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase.

Authors:  M Guthold; X Zhu; C Rivetti; G Yang; N H Thomson; S Kasas; H G Hansma; B Smith; P K Hansma; C Bustamante
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

Review 2.  Diffusional protein transport within the nucleus: a message in the medium.

Authors:  T Pederson
Journal:  Nat Cell Biol       Date:  2000-05       Impact factor: 28.824

3.  Slow diffusion of proteins in the yeast plasma membrane allows polarity to be maintained by endocytic cycling.

Authors:  Javier Valdez-Taubas; Hugh R B Pelham
Journal:  Curr Biol       Date:  2003-09-16       Impact factor: 10.834

4.  Monte carlo simulations of enzyme reactions in two dimensions: fractal kinetics and spatial segregation.

Authors:  Hugues Berry
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

5.  Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells.

Authors:  Matthias Weiss; Markus Elsner; Fredrik Kartberg; Tommy Nilsson
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

6.  Superdiffusion and viscoelastic vortex flows in a two-dimensional complex plasma.

Authors:  S Ratynskaia; K Rypdal; C Knapek; S Khrapak; A V Milovanov; A Ivlev; J J Rasmussen; G E Morfill
Journal:  Phys Rev Lett       Date:  2006-03-17       Impact factor: 9.161

7.  A biological interpretation of transient anomalous subdiffusion. I. Qualitative model.

Authors:  Michael J Saxton
Journal:  Biophys J       Date:  2006-12-01       Impact factor: 4.033

8.  Superdiffusion in two-dimensional Yukawa liquids.

Authors:  Bin Liu; J Goree
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-01-18
  8 in total
  4 in total

1.  Diffusing diffusivity: Rotational diffusion in two and three dimensions.

Authors:  Rohit Jain; K L Sebastian
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

2.  Fractal model of anomalous diffusion.

Authors:  Lech Gmachowski
Journal:  Eur Biophys J       Date:  2015-07-01       Impact factor: 1.733

3.  Macromolecular crowding directs the motion of small molecules inside cells.

Authors:  Stephen Smith; Claudia Cianci; Ramon Grima
Journal:  J R Soc Interface       Date:  2017-06       Impact factor: 4.118

4.  A quantitative modelling approach for DNA repair on a population scale.

Authors:  Leo Zeitler; Cyril Denby Wilkes; Arach Goldar; Julie Soutourina
Journal:  PLoS Comput Biol       Date:  2022-09-12       Impact factor: 4.779

  4 in total

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