| Literature DB >> 19668596 |
Li-Yun Zhang1, Bo Gong, Jian-Ping Tong, Dorothy Shu-Ping Fan, Sylvia Wai-Yee Chiang, Dinghua Lou, Dennis Shun-Chiu Lam, Gary Hin-Fai Yam, Chi-Pui Pang.
Abstract
PURPOSE: To identify the genetic lesions for congenital coralliform cataract.Entities:
Mesh:
Substances:
Year: 2009 PMID: 19668596 PMCID: PMC2722711
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Figure 1Pedigree of coralliform cataract families. The asterisk indicates family members who attended this study. The lens photograph from II-13 in Family A showed a line-shape opacity with a larger white dot end and tubular opacity radiating from the center of the lens. The lens photograph from II-2 in Family B showed a tubular and irregular opacity extending from center of the lens. Large white dots accumulated at the end of tubular protrusions.
SNPs and microsatellite markers selected in 15 known ADCC candidate genes for the linkage analysis.
| 1409 | 21q22.3 | D21S1890 | ||
| | | | | D21S266 |
| | | | | D21S1255 |
| 1410 | 11q22–22.3 | D11S1986 | ||
| | | | D11S4078 | |
| | | | D11S1793 | |
| | | | D11S4151 | |
| 1414 | 22q11 | |||
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| 1415 | 22q11.2 | D22S315 | ||
| | | | D22S1174 | |
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| 1411 | 17q11.1–12 | |||
| 1420 | 2q33–35 | D2S2208 | ||
| | | | D2S2361 | |
| 1421 | 2q33–35 | |||
| 1427 | 3q25-qter | D3S1262 | ||
| | | | D3S3570 | |
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| 4284 | 12q12 | D12S1632 | ||
| | | | D12S1691 | |
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| 2703 | 1q21–25 | D1S498 | ||
| | | | D1S442 | |
| 2700 | 13q11–13 | |||
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| 8419 | 3q21–22 | D3S1290 | ||
| | | | D3S3713 | |
| | | | D3S3657 | |
| | | | D3S1292 | |
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| 5309 | 10q24–25 | D10S1267 | ||
| 4094 | 16q23.2 | D16S3040 | ||
| | | | | D16S504 |
| | | | | D16S503 |
| 3299 | 16q22 | Hcv25749941 | ||
| | | | Hcv25613880 | |
| | | | ||
Gene name, gene ID in NCBI GeneBank, and the chromosomal location for 15 candidate genes were shown in this table. All single nucleotide polymorphism (SNP) markers and microsatellite markers used in this study were listed, respectively.
Specific primers for direct sequencing.
| 1 | 5′-CTCCAGGTCCCCGTGGTA | |
| | | 5′-AGGAGAGGCCAGCACCAC |
| | 2 | 5′-CTGTCTCTGCCAACCCCAG |
| | | 5′-CTGTCCCACCTCTCAGTGCC |
| | 3 | 5′-AATGATCCTGCGATTTTGGAG |
| | | 5′-GGAAGCAAAGGAAGACAGACACC |
| 1 | 5′-TGTAGCTGCAGCTGAAGGAG | |
| | | 5′-TTCCAGTAAGGACTCTCCCG |
| | 2 | 5′-GAAGGATGAATTACCCGGACAG |
| | | 5′-AGACATTGATTTGTAACCCCTGATC |
| | 3 | 5′-GAGTTCTGGGCAGGTGATAAT |
| | | 5′-CTGGTGGGGAAACTTTCTTG |
| 1 | 5′-TGCATAAAATCCCCTTACCGC | |
| | | 5′-ACTCTGGCGGCATGATGG |
| | 2 | 5′-AGACTCATTTGCTTTTTTCCATCC |
| | | 5′-GAATGACAGAAGTCAGCAATTGC |
| 1 | 5′-CAGCAGCCCTCCTGCTAT | |
| | | 5′-GCTTATGTGGGGAGCAAACT |
| | 2 | 5′-CTTTTCTTCTCTTTTTATTTCTGGGTCC |
| | | 5′-GAAAGACACAAGCAAATCAGTGCC |
| 1 | 5′-CTCCTGCAGCCCATCTGG | |
| | | 5′-CTGGTGGCTGTTGCTGATG |
| | 2 | 5′-CATCAGCAACAGCCACCAG |
| | | 5′-GAGAAGCGGTCGTCGAAGT |
| | 3 | 5′-ACTTCGACGACCGCTTCTC |
| | | 5′-TGGCGAGCATGGCTCTAG |
| | 4 | 5′-CCTTTACGCTGCGTTTGATC |
| 5′-AACCCCCAGACAAGAGGC |
Five genes which were sequenced were listed. Forward and reverse primer sequences were provided for each amplicon of each gene.
Sense oligonucleotides for site-directed mutagenesis in CRYGD.
| R15C | 5′-GACCGGGGCTTCCAGGGC |
| R15S | 5′-GACCGGGGCTTCCAGGGC |
| P24T | 5′-GAATGCAGCAGCGACCAC |
| G61C | 5′-TACTTCCTGCGCCGC |
Constructs of four mutations in CRYGD were made. The sense oligonucleotides used in site-directed mutagenesis experiment were listed, respectively.
Figure 2R15S mutation in Family A. A: The upper panel showed the forward (on the left) and the reverse (on the right) DNA segments of wildtype CRYGD. The lower panel displayed the forward and the reverse sequences of mutant CRYGD. The mutation of c.43C>A was indicated by arrow both in forward and reverse sequences. B: The DNA sequences in the upper lines and amino acid sequences in the lower lines were compared between wildtype and mutant CRYGD. The arrow denotes the nucleotide change.
Figure 3Hydrophobicity change of R15S CRYGD. The prediction by ProtScale analysis at Expasy indicated an increase of local hydrophobicity around the site of R15S mutation (Circle in panel B). A: The curve showed the hydrophobicity score of each amino acid of wildtype CRYGD. B: The curve was the hydrophobicity of R15S CRYGD. At the position of the 15th amino acid and its neighboring locations, the hydrophobicity scores increased which was indicated by the circle.
Comparison of wild type and R15S CRYGD amino acid sequences by ScanProsite analysis.
| Casein kinase II phosphorylation | 5–8: TlyE | 5–8: TlyE |
| | | *15–18:ShyE |
| Protein kinase C phosphorylation | 35–37: SaR | 35–37: SaR |
| | 75–77: SvR | 75–77: SvR |
| | 78–80: ScR | 78–80: ScR |
| | 87–89: ShR | 87–89: ShR |
| | 166–168: SlR | 166–168: SlR |
| N-glycosylation | 50–53: NYSG | 50–53: NYSG |
| Cell attachment sequence | 60–62: RGD | 60–62: RGD |
| N-myristoylation | 71–76:GLsdSV | 71–76:GLsdSV |
| | 158–163:GAtnAR | 158–163:GAtnAR |
| Tyrosine kinase phosphorylation | 91–98:Rly,EredY | 91–98:Rly,EredY |
All predicted functional sites in both wildtype and R15S CRYGD were listed in this table. The number is amino acid position. The asterisk indicates the newly formed casein kinase II phosphorylation site in R15S CRYGD.
Figure 4Detergent solubility assay of FLAG-tagged wild type and mutant CRYGD. Western blotting analysis showed cell type specific solubility changes of CRYGD mutants. When expressed in human lens B3 epithelial cells (upper set of blots), wild type (WT) and all known mutant CRYGD (including R15S), except G165fsX8, were completely soluble in 0.5% Triton X-100 extraction. G165fsX8 was mainly Tx-insoluble. When expressed in COS-7 cells (lower set of blots), R15C and R15S CRYGD became moderately Tx-insoluble, unlike the wild type and P24T and G61C mutants. G165fsX8 remained Tx-insoluble.