Literature DB >> 19666142

The quasispecies nature and biological implications of the hepatitis C virus.

Sarah L Fishman1, Andrea D Branch.   

Abstract

Many RNA viruses exist as a cloud of closely related sequence variants called a quasispecies, rather than as a population of identical clones. In this article, we explain the quasispecies nature of RNA viral genomes, and briefly review the principles of quasispecies dynamics and the differences with classical population genetics. We then discuss the current methods for quasispecies analysis and conclude with the biological implications of this phenomenon, focusing on the hepatitis C virus.

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Year:  2009        PMID: 19666142      PMCID: PMC2790008          DOI: 10.1016/j.meegid.2009.07.011

Source DB:  PubMed          Journal:  Infect Genet Evol        ISSN: 1567-1348            Impact factor:   3.342


  144 in total

1.  Coevolution of quasispecies: B-cell mutation rates maximize viral error catastrophes.

Authors:  Christel Kamp; Stefan Bornholdt
Journal:  Phys Rev Lett       Date:  2002-01-28       Impact factor: 9.161

Review 2.  Foot-and-mouth disease virus populations are quasispecies.

Authors:  E Domingo; C Escarmis; M A Martinez; E Martinez-Salas; M G Mateu
Journal:  Curr Top Microbiol Immunol       Date:  1992       Impact factor: 4.291

3.  Differences in epidemiology, liver disease and treatment response among HCV genotypes.

Authors:  Stephanos J. Hadziyannis; John S. Koskinas
Journal:  Hepatol Res       Date:  2004-07       Impact factor: 4.288

4.  Evolution of hepatitis C virus quasispecies in mothers and infants infected through mother-to-infant transmission.

Authors:  Y H Ni; M H Chang; P J Chen; H H Lin; H Y Hsu
Journal:  J Hepatol       Date:  1997-05       Impact factor: 25.083

5.  The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle.

Authors:  M Eigen; P Schuster
Journal:  Naturwissenschaften       Date:  1977-11

6.  Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1.

Authors:  M Poss; A G Rodrigo; J J Gosink; G H Learn; D de Vange Panteleeff; H L Martin; J Bwayo; J K Kreiss; J Overbaugh
Journal:  J Virol       Date:  1998-10       Impact factor: 5.103

7.  The outcome of acute hepatitis C predicted by the evolution of the viral quasispecies.

Authors:  P Farci; A Shimoda; A Coiana; G Diaz; G Peddis; J C Melpolder; A Strazzera; D Y Chien; S J Munoz; A Balestrieri; R H Purcell; H J Alter
Journal:  Science       Date:  2000-04-14       Impact factor: 47.728

Review 8.  The nature of interferon-alpha resistance in hepatitis C virus infection.

Authors:  Jean-Michel Pawlotsky
Journal:  Curr Opin Infect Dis       Date:  2003-12       Impact factor: 4.915

9.  Influence of the genetic heterogeneity of the ISDR and PePHD regions of hepatitis C virus on the response to interferon therapy in chronic hepatitis C.

Authors:  F Puig-Basagoiti; J C Sáiz; X Forns; S Ampurdanès; M Giménez-Barcons; S Franco; A Sánchez-Fueyo; J Costa; J M Sánchez-Tapias; J Rodés
Journal:  J Med Virol       Date:  2001-09       Impact factor: 2.327

10.  Validating viral quasispecies with digital organisms: a re-examination of the critical mutation rate.

Authors:  Iñaki Comas; Andrés Moya; Fernando González-Candelas
Journal:  BMC Evol Biol       Date:  2005-01-15       Impact factor: 3.260

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  29 in total

1.  Reproductive clonality of pathogens: a perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa.

Authors:  Michel Tibayrenc; Francisco J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

2.  Thermostability of subpopulations of H2N3 influenza virus isolates from mallard ducks.

Authors:  Nicholas J Negovetich; Robert G Webster
Journal:  J Virol       Date:  2010-07-07       Impact factor: 5.103

3.  Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus by using next-generation genome sequencing.

Authors:  Caroline F Wright; Marco J Morelli; Gaël Thébaud; Nick J Knowles; Pawel Herzyk; David J Paton; Daniel T Haydon; Donald P King
Journal:  J Virol       Date:  2010-12-15       Impact factor: 5.103

4.  Deep sequencing analysis of quasispecies in the HBV pre-S region and its association with hepatocellular carcinoma.

Authors:  An-Ye Zhang; Ching-Lung Lai; Fung-Yu Huang; Wai-Kay Seto; James Fung; Danny Ka-Ho Wong; Man-Fung Yuen
Journal:  J Gastroenterol       Date:  2017-03-28       Impact factor: 7.527

5.  Serotype-specific interactions among functional domains of dengue virus 2 nonstructural proteins (NS) 5 and NS3 are crucial for viral RNA replication.

Authors:  Tadahisa Teramoto; Anuradha Balasubramanian; Kyung H Choi; Radhakrishnan Padmanabhan
Journal:  J Biol Chem       Date:  2017-04-10       Impact factor: 5.157

6.  Dynamics of defective hepatitis C virus clones in reinfected liver grafts in liver transplant recipients: ultradeep sequencing analysis.

Authors:  Shigeru Ohtsuru; Yoshihide Ueda; Hiroyuki Marusawa; Tadashi Inuzuka; Norihiro Nishijima; Akihiro Nasu; Kazuharu Shimizu; Kaoru Koike; Shinji Uemoto; Tsutomu Chiba
Journal:  J Clin Microbiol       Date:  2013-08-28       Impact factor: 5.948

7.  Cross-genotypic polyclonal anti-HCV antibodies from human ascitic fluid.

Authors:  Julio A Gutierrez; Arielle L Klepper; John Garber; Jose L Walewski; Kristin Bateman; Viktoriya Khaitova; Andrew Syder; Donna M Tscherne; Annick Gauthier; Douglas Jefferson; Charles M Rice; Thomas D Schiano; Andrea D Branch
Journal:  J Virol Methods       Date:  2010-10-27       Impact factor: 2.014

8.  Innate immunity and hepatitis C virus infection: a microarray's view.

Authors:  Luigi Buonaguro; Annacarmen Petrizzo; Maria Lina Tornesello; Franco M Buonaguro
Journal:  Infect Agent Cancer       Date:  2012-03-26       Impact factor: 2.965

9.  Chronic hepatitis C.

Authors:  Jae Young Jang; Raymond T Chung
Journal:  Gut Liver       Date:  2011-06-24       Impact factor: 4.519

10.  Metagenomic abundance estimation and diagnostic testing on species level.

Authors:  Martin S Lindner; Bernhard Y Renard
Journal:  Nucleic Acids Res       Date:  2012-08-31       Impact factor: 16.971

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