Literature DB >> 19662101

The challenge of selecting protein kinase assays for lead discovery optimization.

Haiching Ma1, Sean Deacon, Kurumi Horiuchi.   

Abstract

BACKGROUND: Protein kinases represent one of the most promising groups of drug targets owing to their involvement in such pathological conditions as cancer, inflammatory diseases, neural disorders, and metabolism problems. In the last few years, numerous pharmaceutical and biotech companies have established kinase high-throughput screening (HTS) programs, and the reagent and service industries for kinase assay platforms, kits, and profiling services have begun to thrive.
OBJECTIVE: The plethora of different assay formats available today poses a great challenge to scientists who want to select a technology that will be cost efficient, convenient to use, and have low false positive and false negative rates.
METHODS: In the current review, we summarize the most commonly used kinase assay methods in the drug discovery process, present the advantages and disadvantages of each of these methods, and discuss the challenges of discovering kinase inhibitors by using these technologies.
CONCLUSIONS: The decision of selecting the assay formats for HTS or service platform for profiling should take into account not only the final goals of the screens but also the limitation of resources.

Entities:  

Year:  2008        PMID: 19662101      PMCID: PMC2721227          DOI: 10.1517/17460441.3.6.607

Source DB:  PubMed          Journal:  Expert Opin Drug Discov        ISSN: 1746-0441            Impact factor:   6.098


  35 in total

1.  Effect of the tyrosine kinase inhibitor STI571 in a patient with a metastatic gastrointestinal stromal tumor.

Authors:  H Joensuu; P J Roberts; M Sarlomo-Rikala; L C Andersson; P Tervahartiala; D Tuveson; S Silberman; R Capdeville; S Dimitrijevic; B Druker; G D Demetri
Journal:  N Engl J Med       Date:  2001-04-05       Impact factor: 91.245

Review 2.  The protein kinase complement of the human genome.

Authors:  G Manning; D B Whyte; R Martinez; T Hunter; S Sudarsanam
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

3.  Comparison of assay technologies for a nuclear receptor assay screen reveals differences in the sets of identified functional antagonists.

Authors:  Xiang Wu; J Fraser Glickman; Benjamin R Bowen; Matthew A Sills
Journal:  J Biomol Screen       Date:  2003-08

4.  Comparison of assay technologies for a tyrosine kinase assay generates different results in high throughput screening.

Authors:  Matthew A Sills; Donna Weiss; Quynhchi Pham; Robert Schweitzer; Xiang Wu; Jinzi J Wu
Journal:  J Biomol Screen       Date:  2002-06

Review 5.  Protein kinases--the major drug targets of the twenty-first century?

Authors:  Philip Cohen
Journal:  Nat Rev Drug Discov       Date:  2002-04       Impact factor: 84.694

Review 6.  The evolution of phosphatidylinositol 3-kinases as regulators of growth and metabolism.

Authors:  Jeffrey A Engelman; Ji Luo; Lewis C Cantley
Journal:  Nat Rev Genet       Date:  2006-08       Impact factor: 53.242

7.  Sunitinib versus interferon alfa in metastatic renal-cell carcinoma.

Authors:  Robert J Motzer; Thomas E Hutson; Piotr Tomczak; M Dror Michaelson; Ronald M Bukowski; Olivier Rixe; Stéphane Oudard; Sylvie Negrier; Cezary Szczylik; Sindy T Kim; Isan Chen; Paul W Bycott; Charles M Baum; Robert A Figlin
Journal:  N Engl J Med       Date:  2007-01-11       Impact factor: 91.245

8.  Dasatinib in imatinib-resistant Philadelphia chromosome-positive leukemias.

Authors:  Moshe Talpaz; Neil P Shah; Hagop Kantarjian; Nicholas Donato; John Nicoll; Ron Paquette; Jorge Cortes; Susan O'Brien; Claude Nicaise; Eric Bleickardt; M Anne Blackwood-Chirchir; Vishwanath Iyer; Tai-Tsang Chen; Fei Huang; Arthur P Decillis; Charles L Sawyers
Journal:  N Engl J Med       Date:  2006-06-15       Impact factor: 91.245

Review 9.  Novel detection strategies for drug discovery.

Authors:  Ilkka A Hemmilä; Pertti Hurskainen
Journal:  Drug Discov Today       Date:  2002-09-15       Impact factor: 7.851

10.  Molecule-kinase interaction map.

Authors:  John K Buolamwini; Shantaram Kamath
Journal:  Nat Biotechnol       Date:  2005-11       Impact factor: 54.908

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  39 in total

1.  Measuring and interpreting the selectivity of protein kinase inhibitors.

Authors:  Lynette A Smyth; Ian Collins
Journal:  J Chem Biol       Date:  2009-06-06

Review 2.  Ten things you should know about protein kinases: IUPHAR Review 14.

Authors:  Doriano Fabbro; Sandra W Cowan-Jacob; Henrik Moebitz
Journal:  Br J Pharmacol       Date:  2015-03-24       Impact factor: 8.739

3.  Quantum capacitance-limited MoS2 biosensors enable remote label-free enzyme measurements.

Authors:  Son T Le; Nicholas B Guros; Robert C Bruce; Antonio Cardone; Niranjana D Amin; Siyuan Zhang; Jeffery B Klauda; Harish C Pant; Curt A Richter; Arvind Balijepalli
Journal:  Nanoscale       Date:  2019-08-13       Impact factor: 7.790

4.  Characterization of PKACα enzyme kinetics and inhibition in an HPLC assay with a chromophoric substrate.

Authors:  Nicole M Luzi; Charles E Lyons; Darrell L Peterson; Keith C Ellis
Journal:  Anal Biochem       Date:  2017-06-05       Impact factor: 3.365

5.  High-throughput screening with nucleosome substrate identifies small-molecule inhibitors of the human histone lysine methyltransferase NSD2.

Authors:  Nathan P Coussens; Stephen C Kales; Mark J Henderson; Olivia W Lee; Kurumi Y Horiuchi; Yuren Wang; Qing Chen; Ekaterina Kuznetsova; Jianghong Wu; Sirisha Chakka; Dorian M Cheff; Ken Chih-Chien Cheng; Paul Shinn; Kyle R Brimacombe; Min Shen; Anton Simeonov; Madhu Lal-Nag; Haiching Ma; Ajit Jadhav; Matthew D Hall
Journal:  J Biol Chem       Date:  2018-06-26       Impact factor: 5.157

6.  Sensitive measurement of total protein phosphorylation level in complex protein samples.

Authors:  Li Pan; Linna Wang; Chuan-Chih Hsu; Jiazhen Zhang; Anton Iliuk; W Andy Tao
Journal:  Analyst       Date:  2015-04-10       Impact factor: 4.616

7.  Photocleavable peptide-conjugated magnetic beads for protein kinase assays by MALDI-TOF MS.

Authors:  Guangchang Zhou; Xiaoliang Yan; Ding Wu; Stephen J Kron
Journal:  Bioconjug Chem       Date:  2010-10-20       Impact factor: 4.774

8.  Studies on quantitative phosphopeptide analysis by matrix-assisted laser desorption/ionization mass spectrometry without label, chromatography or calibration curves.

Authors:  Hsin-Pin Ho; Pratikkumar Rathod; Marissa Louis; Christine K Tada; Sherida Rahaman; Kevin J Mark; Jin Leng; Dibyendu Dana; Sanjai Kumar; Mathias Lichterfeld; Emmanuel J Chang
Journal:  Rapid Commun Mass Spectrom       Date:  2014-12-30       Impact factor: 2.419

9.  Discovery, synthesis, and characterization of an orally bioavailable, brain penetrant inhibitor of mixed lineage kinase 3.

Authors:  Val S Goodfellow; Colin J Loweth; Satheesh B Ravula; Torsten Wiemann; Thong Nguyen; Yang Xu; Daniel E Todd; David Sheppard; Scott Pollack; Oksana Polesskaya; Daniel F Marker; Stephen Dewhurst; Harris A Gelbard
Journal:  J Med Chem       Date:  2013-10-03       Impact factor: 7.446

10.  Assay development for histone methyltransferases.

Authors:  Kurumi Y Horiuchi; Mia M Eason; Joseph J Ferry; Jamie L Planck; Colin P Walsh; Robert F Smith; Konrad T Howitz; Haiching Ma
Journal:  Assay Drug Dev Technol       Date:  2013-04-04       Impact factor: 1.738

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