Literature DB >> 19658836

Simple and robust solver for the Poisson-Boltzmann equation.

M Baptista1, R Schmitz, B Dünweg.   

Abstract

A variational approach is used to develop a robust numerical procedure for solving the nonlinear Poisson-Boltzmann equation. Following Maggs and Rossetto [Phys. Rev. Lett. 88, 196402 (2002)], we construct an appropriate constrained free energy functional such that its Euler-Lagrange equations are equivalent to the Poisson-Boltzmann equation. This is a formulation that searches for a true minimum in function space, in contrast to previous variational approaches that rather searched for a saddle point. We then develop, implement, and test an algorithm for its numerical minimization, which is quite simple and unconditionally stable. The analytic solution for planar geometry is used for validation. Some results are presented for a charged colloidal sphere surrounded by counterions and optimizations based upon fast Fourier transforms and hierarchical preconditioning are briefly discussed.

Year:  2009        PMID: 19658836     DOI: 10.1103/PhysRevE.80.016705

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

1.  Comparative atomistic and coarse-grained study of water: what do we lose by coarse-graining?

Authors:  Han Wang; Christoph Junghans; Kurt Kremer
Journal:  Eur Phys J E Soft Matter       Date:  2009-01-14       Impact factor: 1.890

2.  Robustness and Efficiency of Poisson-Boltzmann Modeling on Graphics Processing Units.

Authors:  Ruxi Qi; Ray Luo
Journal:  J Chem Inf Model       Date:  2018-12-31       Impact factor: 4.956

3.  Mean-field description of ionic size effects with nonuniform ionic sizes: a numerical approach.

Authors:  Shenggao Zhou; Zhongming Wang; Bo Li
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-08-01

4.  Competitive adsorption and ordered packing of counterions near highly charged surfaces: From mean-field theory to Monte Carlo simulations.

Authors:  Jiayi Wen; Shenggao Zhou; Zhenli Xu; Bo Li
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-04-26
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.