Literature DB >> 19658520

RNA matrix models with external interactions and their asymptotic behavior.

I Garg1, N Deo.   

Abstract

We study a matrix model of RNA in which an external perturbation on n nucleotides is introduced in the action of the partition function of the polymer chain. The effect of the perturbation appears in the exponential generating function of the partition function as a factor exp(1-nalpha/L) (where alpha is the ratio of strengths of the original to the perturbed term and L is the length of the chain). The asymptotic behavior of the genus distribution functions as a function of length for the matrix model with interaction is analyzed numerically for all n<or=L. It is found that as nalpha/L is increased from 0 to 1, the term 3L in the number of diagrams a'L,g,alpha at a fixed length L, genus g and alpha, goes to 2L [(3-nalpha/L)L for any nalpha/L] and the total number of diagrams Nalpha' at a fixed length L and alpha but independent of genus g, undergoes a change in the factor exp(sqrt[L]) to 1 (exp[(1-nalpha/L)sqrt[L]] for any nalpha/L). However the exponent L of the dominant length dependent term in a'L,g,alpha stays unchanged. Hence the universality is robust to changes in the interaction (alpha). The distribution functions also exhibit unusual behavior at small lengths.

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Year:  2009        PMID: 19658520     DOI: 10.1103/PhysRevE.79.061903

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  2 in total

1.  Structural and thermodynamic properties of a linearly perturbed matrix model for RNA folding.

Authors:  I Garg; N Deo
Journal:  Eur Phys J E Soft Matter       Date:  2010-11-18       Impact factor: 1.890

2.  Topological classification and enumeration of RNA structures by genus.

Authors:  J E Andersen; R C Penner; C M Reidys; M S Waterman
Journal:  J Math Biol       Date:  2012-10-02       Impact factor: 2.259

  2 in total

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