Literature DB >> 19655925

Quantitative model for the heterogeneity of atomic position fluctuations in proteins: a simulation study.

Gerald R Kneller1, Konrad Hinsen.   

Abstract

We propose a simple analytical model for the elastic incoherent structure factor of proteins measured by neutron scattering, which allows extracting the distribution of atomic position fluctuations from a fit of the model to the experimental data. The method is validated by applying it to elastic incoherent structure factors of lysozyme which have been obtained by molecular dynamics simulation and by normal mode analysis, respectively, and for which distributions of the atomic position fluctuations can be generated numerically for direct comparison with the predictions of the model. The comparison shows a remarkable agreement, in particular, concerning the lower limit for the position fluctuations, which is pronounced in the numerical data.

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Year:  2009        PMID: 19655925     DOI: 10.1063/1.3170941

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Bio-protective effects of homologous disaccharides on biological macromolecules.

Authors:  S Magazù; F Migliardo; A Benedetto; R La Torre; L Hennet
Journal:  Eur Biophys J       Date:  2011-10-30       Impact factor: 1.733

2.  Determination of Dynamical Heterogeneity from Dynamic Neutron Scattering of Proteins.

Authors:  Derya Vural; Jeremy C Smith; Henry R Glyde
Journal:  Biophys J       Date:  2018-03-24       Impact factor: 4.033

3.  Zinc determines dynamical properties and aggregation kinetics of human insulin.

Authors:  Kevin Pounot; Geoffrey W Grime; Alessandro Longo; Michaela Zamponi; Daria Noferini; Viviana Cristiglio; Tilo Seydel; Elspeth F Garman; Martin Weik; Vito Foderà; Giorgio Schirò
Journal:  Biophys J       Date:  2021-02-03       Impact factor: 4.033

4.  Molecular Dynamics of Lysozyme Amyloid Polymorphs Studied by Incoherent Neutron Scattering.

Authors:  Tatsuhito Matsuo; Alessio De Francesco; Judith Peters
Journal:  Front Mol Biosci       Date:  2022-01-17
  4 in total

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