Literature DB >> 19654332

Structural basis for the kexin-like serine protease from Aeromonas sobria as sepsis-causing factor.

Hidetomo Kobayashi1, Hiroko Utsunomiya, Hiroyasu Yamanaka, Yoshihisa Sei, Nobuhiko Katunuma, Keinosuke Okamoto, Hideaki Tsuge.   

Abstract

The anaerobic bacterium Aeromonas sobria is known to cause potentially lethal septic shock. We recently proposed that A. sobria serine protease (ASP) is a sepsis-related factor that induces vascular leakage, reductions in blood pressure via kinin release, and clotting via activation of prothrombin. ASP preferentially cleaves peptide bonds that follow dibasic amino acid residues, as do Kex2 (Saccharomyces cerevisiae serine protease) and furin, which are representative kexin family proteases. Here, we revealed the crystal structure of ASP at 1.65 A resolution using the multiple isomorphous replacement method with anomalous scattering. Although the overall structure of ASP resembles that of Kex2, it has a unique extra occluding region close to its active site. Moreover, we found that a nicked ASP variant is cleaved within the occluding region. Nicked ASP shows a greater ability to cleave small peptide substrates than the native enzyme. On the other hand, the cleavage pattern for prekallikrein differs from that of ASP, suggesting the occluding region is important for substrate recognition. The extra occluding region of ASP is unique and could serve as a useful target to facilitate development of novel antisepsis drugs.

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Year:  2009        PMID: 19654332      PMCID: PMC2785694          DOI: 10.1074/jbc.M109.006114

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  41 in total

1.  XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density.

Authors:  D E McRee
Journal:  J Struct Biol       Date:  1999 Apr-May       Impact factor: 2.867

2.  Production of serine protease of Aeromonas sobria is controlled by the protein encoded by the gene lying adjacent to the 3' end of the protease gene.

Authors:  K Okamoto; T Nomura; M Hamada; T Fukuda; Y Noguchi; Y Fujii
Journal:  Microbiol Immunol       Date:  2000       Impact factor: 1.955

Review 3.  Precursor processing by kex2/furin proteases.

Authors:  Nathan C Rockwell; Damian J Krysan; Tomoko Komiyama; Robert S Fuller
Journal:  Chem Rev       Date:  2002-12       Impact factor: 60.622

4.  Automated structure solution, density modification and model building.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

5.  The protein encoded at the 3' end of the serine protease gene of Aeromonas sobria functions as a chaperone in the production of the protease.

Authors:  Tomohiko Nomura; Yoshio Fujii; Hiroyasu Yamanaka; Hidetomo Kobayashi; Keinosuke Okamoto
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

6.  Quantitative characterization of furin specificity. Energetics of substrate discrimination using an internally consistent set of hexapeptidyl methylcoumarinamides.

Authors:  D J Krysan; N C Rockwell; R S Fuller
Journal:  J Biol Chem       Date:  1999-08-13       Impact factor: 5.157

7.  Use of TLS parameters to model anisotropic displacements in macromolecular refinement.

Authors:  M D Winn; M N Isupov; G N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-01

8.  Secretion of hemolysin of Aeromonas sobria as protoxin and contribution of the propeptide region removed from the protoxin to the proteolytic stability of the toxin.

Authors:  T Nomura; Y Fujii; K Okamoto
Journal:  Microbiol Immunol       Date:  1999       Impact factor: 1.955

9.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

10.  2.4 A resolution crystal structure of the prototypical hormone-processing protease Kex2 in complex with an Ala-Lys-Arg boronic acid inhibitor.

Authors:  Todd Holyoak; Mark A Wilson; Timothy D Fenn; Charles A Kettner; Gregory A Petsko; Robert S Fuller; Dagmar Ringe
Journal:  Biochemistry       Date:  2003-06-10       Impact factor: 3.162

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  11 in total

1.  Functional and structural characterization of Vibrio cholerae extracellular serine protease B, VesB.

Authors:  Shilpa Gadwal; Konstantin V Korotkov; Jaclyn R Delarosa; Wim G J Hol; Maria Sandkvist
Journal:  J Biol Chem       Date:  2014-01-23       Impact factor: 5.157

2.  Structural Basis for Action of the External Chaperone for a Propeptide-deficient Serine Protease from Aeromonas sobria.

Authors:  Hidetomo Kobayashi; Toru Yoshida; Takuya Miyakawa; Mitsuru Tashiro; Keinosuke Okamoto; Hiroyasu Yamanaka; Masaru Tanokura; Hideaki Tsuge
Journal:  J Biol Chem       Date:  2015-03-16       Impact factor: 5.157

3.  Determination of microbial diversity of Aeromonas strains on the basis of multilocus sequence typing, phenotype, and presence of putative virulence genes.

Authors:  Maria Elena Martino; Luca Fasolato; Filomena Montemurro; Marina Rosteghin; Amedeo Manfrin; Tomaso Patarnello; Enrico Novelli; Barbara Cardazzo
Journal:  Appl Environ Microbiol       Date:  2011-06-03       Impact factor: 4.792

4.  Insights into the maturation of hyperthermophilic pyrolysin and the roles of its N-terminal propeptide and long C-terminal extension.

Authors:  Zheng Dai; Heting Fu; Yufeng Zhang; Jing Zeng; Bing Tang; Xiao-Feng Tang
Journal:  Appl Environ Microbiol       Date:  2012-04-13       Impact factor: 4.792

5.  Structure of Salmonella FlhE, conserved member of a flagellar type III secretion operon.

Authors:  Jaemin Lee; Arthur F Monzingo; Adrian T Keatinge-Clay; Rasika M Harshey
Journal:  J Mol Biol       Date:  2014-12-26       Impact factor: 5.469

6.  Large-Scale Discovery of Microbial Fibrillar Adhesins and Identification of Novel Members of Adhesive Domain Families.

Authors:  Vivian Monzon; Alex Bateman
Journal:  J Bacteriol       Date:  2022-05-24       Impact factor: 3.476

7.  Prevalence of Potentially Pathogenic Antibiotic-Resistant Aeromonas spp. in Treated Urban Wastewater Effluents versus Recipient Riverine Populations: a 3-Year Comparative Study.

Authors:  Troy Skwor; Sarah Stringer; Jason Haggerty; Jenilee Johnson; Sarah Duhr; Mary Johnson; Megan Seckinger; Maggie Stemme
Journal:  Appl Environ Microbiol       Date:  2020-01-21       Impact factor: 4.792

8.  Functional insight into the C-terminal extension of halolysin SptA from haloarchaeon Natrinema sp. J7.

Authors:  Zhisheng Xu; Xin Du; Tingting Li; Fei Gan; Bing Tang; Xiao-Feng Tang
Journal:  PLoS One       Date:  2011-08-19       Impact factor: 3.240

9.  Aeromonas sobria serine protease decreases epithelial barrier function in T84 cells and accelerates bacterial translocation across the T84 monolayer in vitro.

Authors:  Hidetomo Kobayashi; Soshi Seike; Masafumi Yamaguchi; Mitsunobu Ueda; Eizo Takahashi; Keinosuke Okamoto; Hiroyasu Yamanaka
Journal:  PLoS One       Date:  2019-08-16       Impact factor: 3.240

10.  Involvement of the Arg566 residue of Aeromonas sobria serine protease in substrate specificity.

Authors:  Hidetomo Kobayashi; Tadamune Otsubo; Fumiteru Teraoka; Kiyoshi Ikeda; Soshi Seike; Eizo Takahashi; Keinosuke Okamoto; Toru Yoshida; Hideaki Tsuge; Hiroyasu Yamanaka
Journal:  PLoS One       Date:  2017-10-12       Impact factor: 3.240

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