| Literature DB >> 19652764 |
Salah A Mohamed1, Hans H Sievers, Thorsten Hanke, Doreen Richardt, Claudia Schmidtke, Efstratios I Charitos, Gazanfer Belge, Joern Bullerdiek.
Abstract
BACKGROUND: Acute aortic dissection (AAD) is a life-threatening condition with high mortality and a relatively unclarified pathophysiological mechanism. Although differentially expressed genes in AAD have been recognized, interactions between these genes remain poorly defined. This study was conducted to gain a better understanding of the molecular mechanisms underlying AAD and to support the future development of a clinical test for monitoring patients at high risk.Entities:
Keywords: acute aortic dissection; marfan syndrome; microarrays; pathway analysis
Year: 2009 PMID: 19652764 PMCID: PMC2716678 DOI: 10.4137/bmi.s2530
Source DB: PubMed Journal: Biomark Insights ISSN: 1177-2719
Patients’ demographics.
| Definition | N | Age (Y) | BMI (Kg/m2) | LDH (U/L) |
|---|---|---|---|---|
| AAD | 19 | 61.7 ± 13.1 | 27.0 ± 3.0 | 162.7 ± 60.6 |
| MS | 8 | 32.9 ± 12.2 | 23.0 ± 3.5 | 213 ± 155.8 |
| C | 6 | 56.7 ± 12.3 | 28.3 ± 3.3 | 210.0 ± 67.3 |
Abbreviations: AAD, acute aortic dissection; MS, marfan syndrome; C, further control without dilation of the aorta.
Primer sequences.
| Gene symbol | Forward primer | Reverse primer | Fragment size (bp) |
|---|---|---|---|
| FBLN1 | TCA TCT CGC TGC CTA CCT TC | CCG TCC ATG TAA CGC TTG AT | 163 |
| FBLN2 | TCA CGC ACT ACC AGC TCA AC | CTG CCT CCA GAG CTT CAT CT | 239 |
| DCN | ATG TGT CTA CGT GCG CTC TG | CTG AAA ATG GCA GGC AAA AT | 241 |
| MMP19 | ACA GCC CTT CCA ACT GTG TC | TGC CCG TAA TCA TAA GCA CA | 166 |
| IL6 | TAC CCC CAG GAG AAG ATT C | TTT TCT GCC AGT GCC TCT TT | 175 |
| CCL2 | TCC CCA GAC ACC CTG TTT TA | CAA AAC ATC CCA GGG GTA GA | 199 |
| MFAP5 | GCT TCA CCA GTT TAC GAC GTA TG | ACA GGG AGG AAG TCG GAA GT | 161 |
| MFAP2 | TCC TGT GCC AGG AGC TG | GGG CTG CAG TCC ACT AAC TT | 157 |
| EGR1 | CTG GTG GAG ACC AGT TAC CC | TGG GTT GGT CAT GCT CAC TA | 156 |
| ITGB4 | GCC TTC ACT TTG AGC ACT CC | ACT TGT AGG GCA CGT TCT CG | 238 |
| THBD | ACA TCG ACG AGT GCG AAA AC | GGA GAT GCC TAT GAG CAA GC | 245 |
| ITGA5 | AAG CCC TGA AGA TGC CCT AC | GGA GCG TTT GAA GAA TCC AA | 203 |
| TGFB1 | CAA CAA TTC CTG GCG ATA CC | GAA CCC GTT GAT GTC CAC TT | 193 |
| CCL13 | GCT GGC AGT GGG TTT GTA TT | TTG CAT TCA TCT TTC CAC AA | 152 |
| CXCL14 | GGT CCA AAT GCA AGT GCT C | CAG TGC TCC TGA CCT CGG TA | 151 |
| CCL14 | CAA CCC CAG TGA CAA GTG G | AAG CTC CAA GAG GGT GAC TG | 166 |
| CCL15 | CAC ATC CCA ATC CTG AAT CC | CAA GGC TGA GAG TGC AAC AG | 205 |
| PRG4 | TGC CAG AAT TGA ACC CTA CC | CTT CAG GCA TGA ACA CAT GG | 177 |
| TGFBR2 | CTA ACC TGC TGC CTG TGT GA | TCG GTC TGC TTG AAG GAC TC | 167 |
| MMP9 | GGG AAG ATG CTG CTG TTC A | TCA ACT CAC TCC GGG AAC TC | 202 |
| GEM | ATG CAG CCA CAG CAG CAG | GTC TGT GGA GTC AGA GGA CCA | 150 |
| SFRP2 | GCC TCG ATG ACC TAG ACG AG | GAT GCA AAG GTC GTT GTC CT | 152 |
| COL1A1 | CAG GAA TTC GGC TTC GAC | CCA TGT GAA ATT GTC TCC CAT T | 164 |
| COL11A1 | CAC ATG GCA AAA GCT TTG AA | TGG ATG GAT GAG AAT GAG CA | 185 |
| COL15A1 | TGA ACC TCA AGG GCC AAG TA | TTC GCC ATG CTT CAC AGT AG | 204 |
| COL3A1 | AAA GAC GCA TGT TAT GGT GCT | CAG GAT GAA GGA GGA GAA TCC | 155 |
| COL1A2 | CAC CAC TTG TGG CTT TTG AA | CAA AAC AAG GAC CTC AGT TCA TC | 151 |
| HMOX1 | ATG ACA CCA AGG ACC AGA GC | GTG TAA GGA CCC ATC GGA GA | 153 |
| JUNB | ACC CCT ACC GGA GTC TCA AA | GTT GCT GTT GGG GAC AAT CA | 155 |
| THBS4 | TAT CGC TGC AAT GAC ACC AT | TTG CCA CAT TCA CAT AAA ACG | 194 |
Figure 1Global inter-experiment correlations analysis. Representatively, detection of gene expression: lanes with the initials X3970160, X3970161, X3970162, X3970163 demonstrated the detection of gene expression on microarray, RNA obtained from four samples of AAD tissue hybridized against RNA obtained from MS tissue. In lane X3710104 pooled RNA of eight patients with AAD is shown.
List of 16 condensed genes which are differentially expressed in all patient samples, including the pool of RNA obtained from eight AAD patients.
| Name of the most upregulated genes | Median expression |
|---|---|
| Early growth response 1 | 2.87 |
| Interleukin 6 | 1.32 |
| Integrin, alpha 5 | 2.11 |
| Jun B proto-oncogene | 1.89 |
| Chemokine (C-C motif) ligand 2 | 2.49 |
| FBJ murine osteosarcoma viral oncogene homolog B | 1.84 |
| Matrix metalloproteinase 19 | 1.96 |
| Fibulin 1 | −2.56 |
| Decorin | −3.47 |
| Fibulin 2 | −0.32 |
| Thrombospondin 4 | −2.18 |
| Proteoglycan 4 | −1.89 |
| Microfibrillar associated protein 5 | −0.28 |
| Chemokine (C-X-C motif) ligand 14 | −2.74 |
| Secreted frizzled-related protein 2 | −2.18 |
| Chemokine (C-C motif) ligand 13 | −2.47 |
| Small inducible cytokine b14 precursor | −2.74 |
| Chemokine (C-C motif) ligand 15 | −3.06 |
A sublist of 32 genes was created from genes, whose median values were significant and above the threshold of two-fold regulation. These genes are clustering in a group assigned to ‘extracellular space.’ Nine genes, identical to those represented in Table 3, are marked in cursive.
| Name | Description |
|---|---|
| C2 | complement component 2 |
| PMP22 | peripheral myelin protein 22 |
| SDC1 | syndecan 1 |
| COL11A1 | collagen, type XI, alpha 1 |
| ITGB4 | integrin, beta 4 |
| DCN | decorin |
| thrombospondin 4 | |
| COL1A1 | collagen, type I, alpha 1 |
| IFIT1 | interferon-induced protein with tetratricopeptide repeats 1 |
| LUM | lumican |
| MMP9 | matrix metalloproteinase 9 |
| COL3A1 | collagen, type III, alpha 1 |
| COL1A2 | collagen, type I, alpha 2 |
| JAK1 | Janus kinase 1 |
| MMP12 | matrix metalloproteinase 12 |
| TNFSF10 | tumour necrosis factor (ligand) superfamily, member 10 |
| HSPA4 | heat shock 70 kDa protein 4 |
| fibulin 2 | |
| secreted frizzled-related protein 2 | |
| COL15A1 | collagen, type XV, alpha 1 |
| fibulin-1 | |
| GEM | GTP binding protein |
| MATN2 | matrilin 2 |
| CCL21 | chemokine (C-C motif) ligand 21 |
| CCL19 | chemokine (C-C motif) ligand 19 |
| SLCO2A1 | solute carrier organic anion transporter family, member 2A1 |
| MFAP5 | microfibrillar-associated protein 5 |
| chemokine (C-X-C motif) ligand 14 | |
| proteoglycan 4 | |
| chemokine (C-C motif) ligand 13 | |
| chemokine (C-C motif) ligand 14 | |
| chemokine (C-C motif) ligand 15 |
Figure 2Interactors of FBN1 found by a MedScan search using Pathway Assist software. The genes coding for the proteins with the green halos were differentially expressed in the current microarray experiment.
Figure 3Validation of four differentially expressed genes using qRT-PCR is presented in 3A; those four genes are directly interact in the pathway analysis with FBN1. They are involved in ECM development. Representatively, in 3B) a Western blot demonstrated detection of fibulin-1 protein in tissue obtained from Marfan syndrome (34), in six different patients with AAD (HB54,-55,-56,-57,-69 and HB68) and in control (39).