Literature DB >> 19652330

Structure of the twin-arginine signal-binding protein DmsD from Escherichia coli.

Suresh Kumar Ramasamy1, William M Clemons.   

Abstract

The translocation of folded proteins via the twin-arginine translocation (Tat) pathway is regulated to prevent the futile export of inactive substrate. DmsD is part of a class of cytoplasmic chaperones that play a role in preventing certain redox proteins from premature transport. DmsD from Escherichia coli has been crystallized in space group P4(1)2(1)2, with unit-cell parameters a = b = 97.45, c = 210.04 A, in the presence of a small peptide. The structure has been solved by molecular replacement to a resolution of 2.4 A and refined to an R factor of 19.4%. There are four molecules in the asymmetric unit that may mimic a higher order structure in vivo. There appears to be density for the peptide in a predicted binding pocket, which lends support to its role as the signal-recognition surface for this class of proteins.

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Year:  2009        PMID: 19652330      PMCID: PMC2720324          DOI: 10.1107/S1744309109023811

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  27 in total

Review 1.  The Tat protein export pathway.

Authors:  B C Berks; F Sargent; T Palmer
Journal:  Mol Microbiol       Date:  2000-01       Impact factor: 3.501

2.  A novel protein fold and extreme domain swapping in the dimeric TorD chaperone from Shewanella massilia.

Authors:  Samuel Tranier; Chantal Iobbi-Nivol; Catherine Birck; Marianne Ilbert; Isabelle Mortier-Barrière; Vincent Méjean; Jean-Pierre Samama
Journal:  Structure       Date:  2003-02       Impact factor: 5.006

3.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

4.  REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use.

Authors:  Alexei A Vagin; Roberto A Steiner; Andrey A Lebedev; Liz Potterton; Stuart McNicholas; Fei Long; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

Review 5.  The bacterial twin-arginine translocation pathway.

Authors:  Philip A Lee; Danielle Tullman-Ercek; George Georgiou
Journal:  Annu Rev Microbiol       Date:  2006       Impact factor: 15.500

6.  Physical nature of signal peptide binding to DmsD.

Authors:  Tara L Winstone; Matthew L Workentine; Kwabena J Sarfo; Andrew J Binding; Bronwyn D Haslam; Raymond J Turner
Journal:  Arch Biochem Biophys       Date:  2006-08-22       Impact factor: 4.013

7.  Identification of a twin-arginine leader-binding protein.

Authors:  I J Oresnik; C L Ladner; R J Turner
Journal:  Mol Microbiol       Date:  2001-04       Impact factor: 3.501

8.  Structural analysis of a monomeric form of the twin-arginine leader peptide binding chaperone Escherichia coli DmsD.

Authors:  Charles M Stevens; Tara M L Winstone; Raymond J Turner; Mark Paetzel
Journal:  J Mol Biol       Date:  2009-04-08       Impact factor: 5.469

9.  DmsD is required for the biogenesis of DMSO reductase in Escherichia coli but not for the interaction of the DmsA signal peptide with the Tat apparatus.

Authors:  Nicola Ray; Joanne Oates; Raymond J Turner; Colin Robinson
Journal:  FEBS Lett       Date:  2003-01-16       Impact factor: 4.124

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
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  8 in total

1.  Evaluating a New High-throughput Twin-Arginine Translocase Assay in Bacteria for Therapeutic Applications.

Authors:  Deepanjan Ghosh; Shridhar Chougule; Vellore Sunder Avinash; Sureshkumar Ramasamy
Journal:  Curr Microbiol       Date:  2017-08-04       Impact factor: 2.188

2.  Highly Active Small Aminated Quinolinequinones against Drug-Resistant Staphylococcus aureus and Candida albicans.

Authors:  Hatice Yıldırım; Nilüfer Bayrak; Mahmut Yıldız; Fatıma Nur Yılmaz; Emel Mataracı-Kara; Deepak Shilkar; Venkatesan Jayaprakash; Amaç Fatih TuYuN
Journal:  Molecules       Date:  2022-05-03       Impact factor: 4.927

3.  Biosynthesis of selenate reductase in Salmonella enterica: critical roles for the signal peptide and DmsD.

Authors:  Katherine R S Connelly; Calum Stevenson; Holger Kneuper; Frank Sargent
Journal:  Microbiology (Reading)       Date:  2016-10-20       Impact factor: 2.777

4.  Analysis of haloarchaeal twin-arginine translocase pathway reveals the diversity of the machineries.

Authors:  Deepanjan Ghosh; Debjyoti Boral; Koteswara Rao Vankudoth; Sureshkumar Ramasamy
Journal:  Heliyon       Date:  2019-05-15

5.  Conformational selection underlies recognition of a molybdoenzyme by its dedicated chaperone.

Authors:  Magali Lorenzi; Léa Sylvi; Guillaume Gerbaud; Elisabetta Mileo; Frédéric Halgand; Anne Walburger; Hervé Vezin; Valérie Belle; Bruno Guigliarelli; Axel Magalon
Journal:  PLoS One       Date:  2012-11-19       Impact factor: 3.240

6.  Characterization of a pre-export enzyme-chaperone complex on the twin-arginine transport pathway.

Authors:  Jennifer M Dow; Frank Gabel; Frank Sargent; Tracy Palmer
Journal:  Biochem J       Date:  2013-05-15       Impact factor: 3.857

7.  Unique Photobleaching Phenomena of the Twin-Arginine Translocase Respiratory Enzyme Chaperone DmsD.

Authors:  Fabrizio Rivardo; Thorin G H Leach; Catherine S Chan; Tara M L Winstone; Carol L Ladner; Kwabena J Sarfo; Raymond J Turner
Journal:  Open Biochem J       Date:  2014-01-10

8.  The hydrophobic region of the DmsA twin-arginine leader peptide determines specificity with chaperone DmsD.

Authors:  Tara M L Winstone; Vy A Tran; Raymond J Turner
Journal:  Biochemistry       Date:  2013-10-21       Impact factor: 3.162

  8 in total

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