Literature DB >> 19652180

Point mutation rate of bacteriophage PhiX174.

José M Cuevas1, Siobain Duffy, Rafael Sanjuán.   

Abstract

The point mutation rate of phage PhiX174 was determined using the fluctuation test. After identifying the genetic changes associated with the selected phenotype, we obtained an estimate of 1.0x10(-6) substitutions per base per round of copying, which is consistent with Drake's rule (0.003 mutations per genome per round of copying in DNA-based microorganisms).

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Year:  2009        PMID： 19652180      PMCID： PMC2766332          DOI： 10.1534/genetics.109.106005

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  26 in total

1.  Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis.

Authors:  Gareth M Jenkins; Andrew Rambaut; Oliver G Pybus; Edward C Holmes
Journal:  J Mol Evol       Date:  2002-02       Impact factor: 2.395

2.  Process of infection with bacteriophage phi chi 174. XL. Viral DNA replication of phi chi 174 mutants blocked in progeny single-stranded DNA synthesis.

Authors:  A Fukuda; R L Sinsheimer
Journal:  J Virol       Date:  1976-04       Impact factor: 5.103

3.  The base substitution and frameshift fidelity of Escherichia coli DNA polymerase III holoenzyme in vitro.

Authors:  P T Pham; M W Olson; C S McHenry; R M Schaaper
Journal:  J Biol Chem       Date:  1998-09-04       Impact factor: 5.157

4.  Base selection, proofreading, and mismatch repair during DNA replication in Escherichia coli.

Authors:  R M Schaaper
Journal:  J Biol Chem       Date:  1993-11-15       Impact factor: 5.157

5.  Bacterial rep- mutations that block development of small DNA bacteriophages late in infection.

Authors:  E S Tessman; P K Peterson
Journal:  J Virol       Date:  1976-11       Impact factor: 5.103

Review 6.  Rapid evolution of RNA genomes.

Authors:  J Holland; K Spindler; F Horodyski; E Grabau; S Nichol; S VandePol
Journal:  Science       Date:  1982-03-26       Impact factor: 47.728

7.  An analysis of the clone size distribution of phi-X-174 mutants and recombinants.

Authors:  D T Denhardt; R B Silver
Journal:  Virology       Date:  1966-09       Impact factor: 3.616

8.  Spontaneous mutant frequency and mutation spectrum for gene A of phiX174 grown in E. coli.

Authors:  Jessica L Raney; Robert R Delongchamp; Carrie R Valentine
Journal:  Environ Mol Mutagen       Date:  2004       Impact factor: 3.216

9.  DNA polymerase accuracy and spontaneous mutation rates: frequencies of purine.purine, purine.pyrimidine, and pyrimidine.pyrimidine mismatches during DNA replication.

Authors:  A R Fersht; J W Knill-Jones
Journal:  Proc Natl Acad Sci U S A       Date:  1981-07       Impact factor: 11.205

10.  Avoiding dangerous missense: thermophiles display especially low mutation rates.

Authors:  John W Drake
Journal:  PLoS Genet       Date:  2009-06-19       Impact factor: 5.917
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  18 in total

Review 1.  Viral mutation rates.

Authors:  Rafael Sanjuán; Miguel R Nebot; Nicola Chirico; Louis M Mansky; Robert Belshaw
Journal:  J Virol       Date:  2010-07-21       Impact factor: 5.103

2.  Diversity and distribution of single-stranded DNA phages in the North Atlantic Ocean.

Authors:  Kimberly P Tucker; Rachel Parsons; Erin M Symonds; Mya Breitbart
Journal:  ISME J       Date:  2010-12-02       Impact factor: 10.302

3.  Synergistic Pleiotropy Overrides the Costs of Complexity in Viral Adaptation.

Authors:  Lindsey W McGee; Andrew M Sackman; Anneliese J Morrison; Jessica Pierce; Jeremy Anisman; Darin R Rokyta
Journal:  Genetics       Date:  2015-11-12       Impact factor: 4.562

4.  Modeling Microvirus Capsid Protein Evolution Utilizing Metagenomic Sequence Data.

Authors:  Geoffrey S Diemer; Kenneth M Stedman
Journal:  J Mol Evol       Date:  2016-07-06       Impact factor: 2.395

5.  Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing.

Authors:  Lance D Eckerle; Michelle M Becker; Rebecca A Halpin; Kelvin Li; Eli Venter; Xiaotao Lu; Sana Scherbakova; Rachel L Graham; Ralph S Baric; Timothy B Stockwell; David J Spiro; Mark R Denison
Journal:  PLoS Pathog       Date:  2010-05-06       Impact factor: 6.823

6.  Nucleoside analogue mutagenesis of a single-stranded DNA virus: evolution and resistance.

Authors:  Pilar Domingo-Calap; Marianoel Pereira-Gómez; Rafael Sanjuán
Journal:  J Virol       Date:  2012-06-27       Impact factor: 5.103

7.  Single-stranded genomic architecture constrains optimal codon usage.

Authors:  Daniel J Cardinale; Siobain Duffy
Journal:  Bacteriophage       Date:  2011-07-01

8.  The fitness effects of random mutations in single-stranded DNA and RNA bacteriophages.

Authors:  Pilar Domingo-Calap; José M Cuevas; Rafael Sanjuán
Journal:  PLoS Genet       Date:  2009-11-26       Impact factor: 5.917

9.  Delayed lysis confers resistance to the nucleoside analogue 5-fluorouracil and alleviates mutation accumulation in the single-stranded DNA bacteriophage ϕX174.

Authors:  Marianoel Pereira-Gómez; Rafael Sanjuán
Journal:  J Virol       Date:  2014-02-19       Impact factor: 5.103

10.  Estimation of sequencing error rates in short reads.

Authors:  Xin Victoria Wang; Natalie Blades; Jie Ding; Razvan Sultana; Giovanni Parmigiani
Journal:  BMC Bioinformatics       Date:  2012-07-30       Impact factor: 3.169
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