Literature DB >> 19644745

Causal pattern recovery from neural spike train data using the Snap Shot Score.

Christoph Echtermeyer1, Tom V Smulders2, V Anne Smith3.   

Abstract

We present a new approach to learning directed information flow networks from multi-channel spike train data. A novel scoring function, the Snap Shot Score, is used to assess potential networks with respect to their quality of causal explanation for the data. Additionally, we suggest a generic concept of plausibility in order to assess network learning techniques under partial observability conditions. Examples demonstrate the assessment of networks with the Snap Shot Score, and neural network simulations show its performance in complex situations with partial observability. We discuss the application of the new score to real data and indicate how it can be modified to suit other neural data types.

Mesh:

Year:  2009        PMID: 19644745     DOI: 10.1007/s10827-009-0174-2

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  41 in total

Review 1.  Information theory and neural coding.

Authors:  A Borst; F E Theunissen
Journal:  Nat Neurosci       Date:  1999-11       Impact factor: 24.884

Review 2.  Multiple neural spike train data analysis: state-of-the-art and future challenges.

Authors:  Emery N Brown; Robert E Kass; Partha P Mitra
Journal:  Nat Neurosci       Date:  2004-05       Impact factor: 24.884

Review 3.  Organization, development and function of complex brain networks.

Authors:  Olaf Sporns; Dante R Chialvo; Marcus Kaiser; Claus C Hilgetag
Journal:  Trends Cogn Sci       Date:  2004-09       Impact factor: 20.229

4.  A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects.

Authors:  Wilson Truccolo; Uri T Eden; Matthew R Fellows; John P Donoghue; Emery N Brown
Journal:  J Neurophysiol       Date:  2004-09-08       Impact factor: 2.714

5.  Analyzing functional connectivity using a network likelihood model of ensemble neural spiking activity.

Authors:  Murat Okatan; Matthew A Wilson; Emery N Brown
Journal:  Neural Comput       Date:  2005-09       Impact factor: 2.026

6.  A new multi-electrode array design for chronic neural recording, with independent and automatic hydraulic positioning.

Authors:  T Sato; T Suzuki; K Mabuchi
Journal:  J Neurosci Methods       Date:  2006-09-22       Impact factor: 2.390

7.  Discrete dynamic Bayesian network analysis of fMRI data.

Authors:  John Burge; Terran Lane; Hamilton Link; Shibin Qiu; Vincent P Clark
Journal:  Hum Brain Mapp       Date:  2009-01       Impact factor: 5.038

8.  Dynamics of neuronal firing correlation: modulation of "effective connectivity".

Authors:  A M Aertsen; G L Gerstein; M K Habib; G Palm
Journal:  J Neurophysiol       Date:  1989-05       Impact factor: 2.714

9.  Maximum likelihood identification of neural point process systems.

Authors:  E S Chornoboy; L P Schramm; A F Karr
Journal:  Biol Cybern       Date:  1988       Impact factor: 2.086

10.  A new planar multielectrode array: recording from a rat auditory cortex.

Authors:  Vassiliy Tsytsarev; Makoto Taketani; Frank Schottler; Shigeru Tanaka; Masahiko Hara
Journal:  J Neural Eng       Date:  2006-10-06       Impact factor: 5.379

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  1 in total

1.  Identification of Functionally Interconnected Neurons Using Factor Analysis.

Authors:  Jorge H Soletta; Fernando D Farfán; Ana L Albarracín; Alvaro G Pizá; Facundo A Lucianna; Carmelo J Felice
Journal:  Comput Intell Neurosci       Date:  2017-04-16
  1 in total

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