| Literature DB >> 19644225 |
Abstract
To confirm my previous findings that the A(y) allele at the agouti locus reduced the mandible size and therefore altered the mandible shape in a KK mouse strain background, I further investigated the effects of the A(y) allele on mandible morphology on different strain backgrounds, DDD and B6. Principal component analysis revealed that the mandible was significantly smaller in A(y) mice (DDD-A(y) and B6-A(y)) than in corresponding non-A(y) mice (DDD and B6, respectively). Discriminant and canonical discriminant analyses revealed that most mice were classified correctly in their own strains, and misclassification was not observed between DDD (-A(y)) and B6 (-A(y)). The results confirmed that the A(y) allele reduced the mandible size and altered the mandible shape regardless of the strain background. However, the difference in mandible morphology between A(y) mice and the corresponding non-A(y) mice within a strain was not as large as that which intrinsically underlay the two strains. Possible mechanisms of the A(y) action are discussed.Entities:
Mesh:
Substances:
Year: 2009 PMID: 19644225 PMCID: PMC3561848 DOI: 10.2183/pjab.85.248
Source DB: PubMed Journal: Proc Jpn Acad Ser B Phys Biol Sci ISSN: 0386-2208 Impact factor: 3.493
Fig. 1.Diagram of the 13 mandible measurement sites (X1–X13) used in this study. Roughly, measurements X1–X7 represent the height from the x-axis to the horizontal dotted line at each site, and X8–X13 represent the length measured from the y-axis to the vertical dotted line at each site.
Means for mandible measurement variables (mm) in each strain
| Strain | Variables
| ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| X1 | X2 | X3 | X4 | X5 | X6 | X7 | X8 | X9 | X10 | X11 | X12 | X13 | |
| DM | |||||||||||||
| DDD- | 0.833 | 2.015 | 2.748 | 3.850 | 4.818 | 5.330 | 5.915 | 3.152 | 7.893 | 8.254 | 10.033 | 11.868 | 11.410 |
| DDD | 0.852 | 1.978 | 2.685 | 3.926 | 4.985 | 5.390 | 6.013 | 3.168 | 8.233 | 8.703 | 10.050 | 11.882 | 11.545 |
| ns | 0.045 | 0.026 | 0.0011 | 0.00067 | ns | 0.016 | ns | 0.0041 | 0.0052 | ns | ns | 0.0027 | |
|
| |||||||||||||
| BM | |||||||||||||
| B6- | 0.866 | 2.075 | 2.813 | 4.038 | 4.765 | 5.467 | 6.069 | 3.177 | 7.963 | 8.385 | 9.997 | 11.485 | 11.745 |
| B6 | 0.806 | 2.030 | 2.765 | 4.051 | 4.781 | 5.453 | 6.103 | 3.174 | 8.001 | 8.521 | 9.973 | 11.535 | 11.823 |
| 0.017 | 0.010 | ns | ns | ns | ns | ns | ns | ns | 0.013 | ns | ns | ns | |
|
| |||||||||||||
| DF | |||||||||||||
| DDD- | 0.755 | 2.097 | 2.840 | 3.910 | 4.802 | 5.237 | 5.858 | 3.125 | 8.053 | 8.504 | 9.958 | 11.756 | 11.544 |
| DDD | 0.764 | 2.067 | 2.822 | 4.015 | 4.842 | 5.232 | 5.928 | 3.119 | 8.250 | 8.728 | 9.997 | 11.724 | 11.745 |
| ns | 0.031 | ns | 0.00073 | ns | ns | ns | ns | 0.000060 | 0.000013 | ns | ns | 0.00072 | |
|
| |||||||||||||
| BF | |||||||||||||
| B6- | 0.732 | 2.030 | 2.801 | 3.992 | 4.653 | 5.267 | 5.919 | 3.173 | 7.915 | 8.372 | 9.806 | 11.162 | 11.696 |
| B6 | 0.697 | 2.021 | 2.774 | 4.024 | 4.706 | 5.271 | 5.940 | 3.194 | 8.131 | 8.671 | 9.909 | 11.253 | 11.980 |
| ns | ns | ns | ns | ns | ns | ns | ns | 0.000067 | 0.0000038 | ns | ns | 0.000030 | |
ns: not significant
Eigenvalue and its contribution to each PC
| PC | Group | Eigenvalue | Cumulative contribution ratio (%) |
|---|---|---|---|
| 1 | DM | 4.875 | 37.502 |
| BM | 5.697 | 43.824 | |
| DF | 5.170 | 39.771 | |
| BF | 5.522 | 42.478 | |
|
| |||
| 2 | DM | 2.668 | 58.025 |
| BM | 2.455 | 62.706 | |
| DF | 2.635 | 60.038 | |
| BF | 2.436 | 61.219 | |
|
| |||
| 3 | DM | 1.981 | 73.263 |
| BM | 1.598 | 75.001 | |
| DF | 1.818 | 74.021 | |
| BF | 1.619 | 73.677 | |
|
| |||
| 4 | DM | 1.149 | 82.100 |
| BM | 1.031 | 82.935 | |
| DF | 1.409 | 84.858 | |
| BF | 1.033 | 81.622 | |
Eigenvector of each PC
| Variable | PC
| |||||||
| 1
| 2
| |||||||
| DM | BM | DF | BF | DM | BM | DF | BF | |
|
| ||||||||
| X1 | 0.171 | 0.094 | 0.140 | −0.139 | 0.350 | 0.408 | 0.316 | 0.186 |
| X2 | 0.068 | 0.153 | − 0.113 | 0.160 | 0.233 | 0.103 | 0.074 | 0.272 |
| X3 | 0.075 | 0.275 | 0.044 | 0.096 | 0.068 | −0.188 | − 0.069 | 0.199 |
| X4 | 0.309 | 0.220 | 0.343 | 0.289 | 0.305 | 0.203 | − 0.020 | 0.267 |
| X5 | 0.325 | 0.162 | 0.330 | 0.283 | 0.299 | 0.507 | 0.339 | 0.376 |
| X6 | 0.151 | 0.187 | 0.222 | 0.213 | 0.383 | 0.424 | 0.476 | 0.435 |
| X7 | 0.317 | 0.247 | 0.318 | 0.218 | 0.296 | 0.370 | 0.341 | 0.413 |
| X8 | 0.237 | 0.326 | 0.150 | 0.297 | − 0.333 | −0.267 | − 0.384 | −0.222 |
| X9 | 0.368 | 0.364 | 0.336 | 0.358 | − 0.298 | −0.129 | − 0.340 | −0.261 |
| X10 | 0.356 | 0.321 | 0.245 | 0.279 | − 0.106 | −0.070 | − 0.371 | −0.319 |
| X11 | 0.313 | 0.375 | 0.379 | 0.379 | − 0.321 | −0.165 | − 0.078 | −0.137 |
| X12 | 0.257 | 0.331 | 0.318 | 0.344 | − 0.361 | −0.230 | 0.043 | −0.146 |
| X13 | 0.392 | 0.360 | 0.385 | 0.365 | − 0.184 | −0.015 | − 0.181 | −0.143 |
|
| ||||||||
| Variable | 3
| 4
| ||||||
| DM | BM | DF | BF | DM | BM | DF | BF | |
|
| ||||||||
| X1 | 0.085 | 0.338 | − 0.009 | −0.181 | 0.311 | −0.032 | 0.245 | 0.423 |
| X2 | 0.606 | 0.661 | 0.668 | 0.478 | − 0.068 | 0.206 | 0.104 | −0.062 |
| X3 | 0.647 | 0.421 | 0.642 | 0.656 | − 0.179 | 0.129 | 0.297 | −0.122 |
| X4 | 0.143 | 0.251 | 0.065 | 0.178 | 0.017 | −0.512 | 0.381 | −0.098 |
| X5 | − 0.263 | −0.245 | 0.015 | −0.283 | − 0.021 | 0.086 | 0.051 | −0.092 |
| X6 | − 0.202 | −0.226 | − 0.024 | −0.274 | 0.368 | 0.447 | − 0.121 | 0.119 |
| X7 | − 0.092 | −0.060 | − 0.044 | −0.226 | − 0.028 | −0.213 | 0.022 | −0.068 |
| X8 | 0.177 | −0.037 | 0.223 | 0.043 | 0.313 | −0.004 | − 0.438 | 0.527 |
| X9 | − 0.114 | −0.091 | − 0.110 | −0.080 | − 0.461 | −0.210 | 0.171 | −0.194 |
| X10 | − 0.110 | −0.186 | − 0.191 | −0.132 | − 0.491 | −0.479 | 0.302 | −0.387 |
| X11 | 0.100 | 0.020 | 0.120 | 0.129 | 0.236 | 0.295 | − 0.295 | 0.270 |
| X12 | 0.026 | −0.133 | 0.146 | 0.083 | 0.341 | 0.195 | − 0.513 | 0.399 |
| X13 | − 0.005 | −0.180 | − 0.001 | −0.146 | 0.073 | 0.165 | 0.120 | −0.260 |
Means ± S.D. for PC scores in each strain
| Strain | PC scores
| |||
|---|---|---|---|---|
| PC1 | PC2 | PC3 | PC4 | |
| DM | ||||
| DDD- | − 0.667 ± 0.741 | −0.204 ± 0.852 | 0.653 ± 0.921 | 0.162 ± 0.648 |
| DDD | 0.400 ± 0.930 | 0.123 ± 1.081 | −0.392 ± 0.842 | −0.097 ± 1.167 |
| | 0.0012 | ns | 0.0026 | ns |
|
| ||||
| BM | ||||
| B6- | − 0.073 ± 0.973 | 0.092 ± 1.005 | 0.569 ± 0.995 | 0.412 ± 0.964 |
| B6 | 0.073 ± 1.055 | −0.092 ± 1.021 | −0.569 ± 0.622 | −0.412 ± 0.883 |
| | ns | ns | 0.0010 | 0.021 |
|
| ||||
| DF | ||||
| DDD- | − 0.517 ± 0.774 | 0.300 ± 1.197 | 0.432 ± 0.877 | −0.578 ± 1.023 |
| DDD | 0.477 ± 0.967 | −0.277 ± 0.717 | −0.399 ± 0.968 | 0.533 ± 0.631 |
| | 0.0091 | ns | 0.034 | 0.0031 |
|
| ||||
| BF | ||||
| B6- | − 0.490 ± 1.195 | 0.354 ± 0.751 | 0.301 ± 0.957 | 0.574 ± 0.705 |
| B6 | 0.455 ± 0.467 | −0.329 ± 1.112 | −0.279 ± 0.990 | −0.533 ± 0.951 |
| | 0.017 | ns | ns | 0.0020 |
ns: not significant
Results of classification analysis by means of discriminant function (all of the strains were merged)
| Strain | No. of cases classified in strain
| Total (% of misclassification) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| DDD- | DDD males | B6- | B6 males | DDD- | DDD females | B6- | B6 females | ||
| DDD- | 12 | 12 (0) | |||||||
| DDD males | 20 | 20 (0) | |||||||
| B6- | 14 | 1 | 15 (6.7) | ||||||
| B6 males | 1 | 14 | 15 (6.7) | ||||||
| DDD- | 11 | 1 | 12 (8.3) | ||||||
| DDD females | 1 | 12 | 13 (7.7) | ||||||
| B6- | 12 | 1 | 13 (7.7) | ||||||
| B6 females | 1 | 13 | 14 (7.1) | ||||||
Blank means no incidence (0).
Incorrectly classified mandibles. In total, 6/114 was incorrectly classified.
Fig. 2.Scatter diagram of 8 strains on a plane. (A) Plot of 1st canonical variate (x-axis) and 2nd canonical variate (y-axis). (B) Plot of 1st canonical variate (x-axis) and 3rd canonical variate (y-axis). Each point indicates the position of an individual mouse.
Eigenvalue and its contribution
| Canonical variate | Eigenvalue | Contribution ratio (%) |
|---|---|---|
| 1st | 24.985 | 79.9 |
| 2nd | 3.251 | 10.4 |
| 3rd | 1.554 | 5.0 |
Fig. 3.Scatter diagram of 12 strains on plane by 1st (x-axis) and 2nd (y-axis) canonical variate. Canonical discriminant analysis was performed by incorporating the data on KK-A and KK. Each strain was plotted as a point. Lines are drawn around the strains to clarify the relationships, but these lines have no statistical meaning.
Comparison of body weight, spleen weight, and testis weight (mean ± S.D.)
| Strain | Body weight (g) | Spleen weight (mg) | Testis weight (mg) |
|---|---|---|---|
| DM | |||
| DDD- | 43.81 ± 2.33 | 105.75 ± 8.15 | 255.05 ± 7.36 |
| DDD | 36.00 ± 3.26 | 103.43 ± 19.34 | 299.23 ± 14.58 |
| 2.94 × 10−9 | ns | 1.15 × 10−7 | |
|
| |||
| BM | |||
| B6- | 42.63 ± 2.06 | 85.69 ± 8.53 | 192.47 ± 9.44 |
| B6 | 30.89 ± 1.82 | 87.56 ± 18.97 | 209.13 ± 10.80 |
| 1.97 × 10−15 | ns | 0.00015 | |
|
| |||
| DF | |||
| DDD- | 54.20 ± 2.76 | 112.36 ± 10.91 | na |
| DDD | 32.01 ± 2.46 | 117.71 ± 13.61 | na |
| 1.28 × 10−16 | ns | ||
|
| |||
| BF | |||
| B6- | 38.53 ± 3.69 | 104.03 ± 12.37 | na |
| B6 | 23.57 ± 0.65 | 92.79 ± 12.53 | na |
| 5.89 × 10−14 | 0.027 | ||
ns: not significant; na: not applicable