Literature DB >> 19643814

Evaluation of imaging plates as recording medium for images of negatively stained single particles and electron diffraction patterns of two-dimensional crystals.

Zongli Li1, Richard K Hite, Yifan Cheng, Thomas Walz.   

Abstract

We evaluated imaging plates (IPs) and the DITABIS Micron scanner for their use in recording images of negatively stained single-particle specimens and electron diffraction patterns of two-dimensional crystals. We first established the optimal imaging and read-out conditions for images of negatively stained single-particle specimens using the signal-to-noise ratio of the images as the evaluation criterion. We found that images were best recorded on IPs at a magnification of 67,000x, read out with a gain setting of 20,000 and a laser power setting of 30% with subsequent binning over 2 x 2 pixels. Our results show that for images of negatively stained specimens, for which the resolution is limited to approximately 20 A, IPs are a good alternative to EM film. We also compared IPs with a 2K x 2K Gatan charge-coupled device (CCD) camera for their use in recording electron diffraction patterns of sugar-embedded two-dimensional crystals. Diffraction patterns of aquaporin-0 recorded on IPs and with the CCD camera showed reflections beyond 3 A and had similar R(Friedel) as well as R(merge) values. IPs can thus be used to collect diffraction patterns, but CCD cameras are more convenient and remain the best option for recording electron diffraction patterns.

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Year:  2009        PMID: 19643814      PMCID: PMC3156676          DOI: 10.1093/jmicro/dfp036

Source DB:  PubMed          Journal:  J Electron Microsc (Tokyo)        ISSN: 0022-0744


  21 in total

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2.  Assessing the capabilities of a 4kx4k CCD camera for electron cryo-microscopy at 300kV.

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Authors:  Wenman Wu; Dipali Sinha; Sergei Shikov; Calvin K Yip; Thomas Walz; Paul C Billings; James D Lear; Peter N Walsh
Journal:  J Biol Chem       Date:  2008-04-25       Impact factor: 5.157

4.  Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases.

Authors:  Julius Rabl; David M Smith; Yadong Yu; Shih-Chung Chang; Alfred L Goldberg; Yifan Cheng
Journal:  Mol Cell       Date:  2008-05-09       Impact factor: 17.970

5.  Imaging plate illuminates many fields.

Authors:  Y Amemiya; J Miyahara
Journal:  Nature       Date:  1988-11-03       Impact factor: 49.962

6.  Application of the "imaging plate" to TEM image recording.

Authors:  N Mori; T Oikawa; T Katoh; J Miyahara; Y Harada
Journal:  Ultramicroscopy       Date:  1988       Impact factor: 2.689

7.  Electron microscopy of the stacked disk aggregate of tobacco mosaic virus protein. II. The influence of electron irradiation of the stain distribution.

Authors:  P N Unwin
Journal:  J Mol Biol       Date:  1974-08-25       Impact factor: 5.469

8.  Computed radiography utilizing scanning laser stimulated luminescence.

Authors:  M Sonoda; M Takano; J Miyahara; H Kato
Journal:  Radiology       Date:  1983-09       Impact factor: 11.105

9.  Structure of the human transferrin receptor-transferrin complex.

Authors:  Yifan Cheng; Olga Zak; Philip Aisen; Stephen C Harrison; Thomas Walz
Journal:  Cell       Date:  2004-02-20       Impact factor: 41.582

10.  Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy.

Authors:  Melanie Ohi; Ying Li; Yifan Cheng; Thomas Walz
Journal:  Biol Proced Online       Date:  2004-03-19       Impact factor: 3.244

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  9 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

2.  The RIP1/RIP3 necrosome forms a functional amyloid signaling complex required for programmed necrosis.

Authors:  Jixi Li; Thomas McQuade; Ansgar B Siemer; Johanna Napetschnig; Kenta Moriwaki; Yu-Shan Hsiao; Ermelinda Damko; David Moquin; Thomas Walz; Ann McDermott; Francis Ka-Ming Chan; Hao Wu
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

3.  Fast and easy protocol for the purification of recombinant S-layer protein for synthetic biology applications.

Authors:  Julie E Norville; Deborah F Kelly; Thomas F Knight; Angela M Belcher; Thomas Walz
Journal:  Biotechnol J       Date:  2011-06-17       Impact factor: 4.677

4.  Molecular structure and dimeric organization of the Notch extracellular domain as revealed by electron microscopy.

Authors:  Deborah F Kelly; Robert J Lake; Teije C Middelkoop; Hua-Ying Fan; Spyros Artavanis-Tsakonas; Thomas Walz
Journal:  PLoS One       Date:  2010-05-07       Impact factor: 3.240

5.  Molecular architecture of the TRAPPII complex and implications for vesicle tethering.

Authors:  Calvin K Yip; Julia Berscheminski; Thomas Walz
Journal:  Nat Struct Mol Biol       Date:  2010-10-24       Impact factor: 15.369

Review 6.  Strategy for the use of affinity grids to prepare non-His-tagged macromolecular complexes for single-particle electron microscopy.

Authors:  Deborah F Kelly; Danijela Dukovski; Thomas Walz
Journal:  J Mol Biol       Date:  2010-05-24       Impact factor: 5.469

7.  The Fas-FADD death domain complex structure reveals the basis of DISC assembly and disease mutations.

Authors:  Liwei Wang; Jin Kuk Yang; Venkataraman Kabaleeswaran; Amanda J Rice; Anthony C Cruz; Ah Young Park; Qian Yin; Ermelinda Damko; Se Bok Jang; Stefan Raunser; Carol V Robinson; Richard M Siegel; Thomas Walz; Hao Wu
Journal:  Nat Struct Mol Biol       Date:  2010-10-10       Impact factor: 15.369

8.  Molecular organization of the COG vesicle tethering complex.

Authors:  Joshua A Lees; Calvin K Yip; Thomas Walz; Frederick M Hughson
Journal:  Nat Struct Mol Biol       Date:  2010-10-24       Impact factor: 15.369

9.  Structural analyses of the chromatin remodelling enzymes INO80-C and SWR-C.

Authors:  Shinya Watanabe; Dongyan Tan; Mahadevan Lakshminarasimhan; Michael P Washburn; Eun-Jin Erica Hong; Thomas Walz; Craig L Peterson
Journal:  Nat Commun       Date:  2015-05-12       Impact factor: 14.919

  9 in total

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