Literature DB >> 19641223

DetecTiff: a novel image analysis routine for high-content screening microscopy.

Daniel F Gilbert1, Till Meinhof, Rainer Pepperkok, Heiko Runz.   

Abstract

In this article, the authors describe the image analysis software DetecTiff, which allows fully automated object recognition and quantification from digital images. The core module of the LabView-based routine is an algorithm for structure recognition that employs intensity thresholding and size-dependent particle filtering from microscopic images in an iterative manner. Detected structures are converted into templates, which are used for quantitative image analysis. DetecTiff enables processing of multiple detection channels and provides functions for template organization and fast interpretation of acquired data. The authors demonstrate the applicability of DetecTiff for automated analysis of cellular uptake of fluorescence-labeled low-density lipoproteins as well as diverse other image data sets from a variety of biomedical applications. Moreover, the performance of DetecTiff is compared with preexisting image analysis tools. The results show that DetecTiff can be applied with high consistency for automated quantitative analysis of image data (e.g., from large-scale functional RNAi screening projects).

Mesh:

Year:  2009        PMID: 19641223     DOI: 10.1177/1087057109339523

Source DB:  PubMed          Journal:  J Biomol Screen        ISSN: 1087-0571


  14 in total

1.  Proliferation characteristics of cells cultured under periodic versus static conditions.

Authors:  Daniel F Gilbert; Sepideh Abolpour Mofrad; Oliver Friedrich; Joachim Wiest
Journal:  Cytotechnology       Date:  2018-12-04       Impact factor: 2.058

2.  Exon-skipping splice variants of excitatory amino acid transporter-2 (EAAT2) form heteromeric complexes with full-length EAAT2.

Authors:  Florian M Gebhardt; Ann D Mitrovic; Daniel F Gilbert; Robert J Vandenberg; Joseph W Lynch; Peter R Dodd
Journal:  J Biol Chem       Date:  2010-08-05       Impact factor: 5.157

3.  Niemann-Pick Type C disease: characterizing lipid levels in patients with variant lysosomal cholesterol storage.

Authors:  Carolina Tängemo; Dominik Weber; Susanne Theiss; Eugen Mengel; Heiko Runz
Journal:  J Lipid Res       Date:  2011-01-17       Impact factor: 5.922

4.  A novel phenotypic dissimilarity method for image-based high-throughput screens.

Authors:  Xian Zhang; Michael Boutros
Journal:  BMC Bioinformatics       Date:  2013-11-21       Impact factor: 3.169

5.  Store-Operated Ca2+ Entry (SOCE) and Purinergic Receptor-Mediated Ca2+ Homeostasis in Murine bv2 Microglia Cells: Early Cellular Responses to ATP-Mediated Microglia Activation.

Authors:  Daniel F Gilbert; Martin J Stebbing; Katharina Kuenzel; Robyn M Murphy; Evelyn Zacharewicz; Andreas Buttgereit; Leanne Stokes; David J Adams; Oliver Friedrich
Journal:  Front Mol Neurosci       Date:  2016-10-28       Impact factor: 5.639

6.  High Throughput Techniques for Discovering New Glycine Receptor Modulators and their Binding Sites.

Authors:  Daniel F Gilbert; Robiul Islam; Timothy Lynagh; Joseph W Lynch; Timothy I Webb
Journal:  Front Mol Neurosci       Date:  2009-10-30       Impact factor: 5.639

7.  miR-17-5p regulates endocytic trafficking through targeting TBC1D2/Armus.

Authors:  Andrius Serva; Bettina Knapp; Yueh-Tso Tsai; Christoph Claas; Tautvydas Lisauskas; Petr Matula; Nathalie Harder; Lars Kaderali; Karl Rohr; Holger Erfle; Roland Eils; Vania Braga; Vytaute Starkuviene
Journal:  PLoS One       Date:  2012-12-20       Impact factor: 3.240

8.  Fluorescence-based high-throughput functional profiling of ligand-gated ion channels at the level of single cells.

Authors:  Sahil Talwar; Joseph W Lynch; Daniel F Gilbert
Journal:  PLoS One       Date:  2013-03-08       Impact factor: 3.240

9.  Amyloidogenic amyloid-β-peptide variants induce microbial agglutination and exert antimicrobial activity.

Authors:  Philipp Spitzer; Mateja Condic; Martin Herrmann; Timo Jan Oberstein; Marina Scharin-Mehlmann; Daniel F Gilbert; Oliver Friedrich; Teja Grömer; Johannes Kornhuber; Roland Lang; Juan Manuel Maler
Journal:  Sci Rep       Date:  2016-09-14       Impact factor: 4.379

10.  A Recombinant Human Pluripotent Stem Cell Line Stably Expressing Halide-Sensitive YFP-I152L for GABAAR and GlyR-Targeted High-Throughput Drug Screening and Toxicity Testing.

Authors:  Katharina Kuenzel; Oliver Friedrich; Daniel F Gilbert
Journal:  Front Mol Neurosci       Date:  2016-06-28       Impact factor: 5.639

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