Literature DB >> 19639425

The genetic code--more than just a table.

D Berleant1, M White, E Pierce, E Tudoreanu, A Boeszoermenyi, Y Shtridelman, J C Macosko.   

Abstract

The standard codon table is a primary tool for basic understanding of molecular biology. In the minds of many, the table's orderly arrangement of bases and amino acids is synonymous with the true genetic code, i.e., the biological coding principle itself. However, developments in the field reveal a much more complex and interesting picture. In this article, we review the traditional codon table and its limitations in light of the true complexity of the genetic code. We suggest the codon table be brought up to date and, as a step, we present a novel superposition of the BLOSUM62 matrix and an allowed point mutation matrix. This superposition depicts an important aspect of the true genetic code-its ability to tolerate mutations and mistranslations.

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Year:  2009        PMID: 19639425     DOI: 10.1007/s12013-009-9060-9

Source DB:  PubMed          Journal:  Cell Biochem Biophys        ISSN: 1085-9195            Impact factor:   2.194


  8 in total

1.  The rules of variation: amino acid exchange according to the rotating circular genetic code.

Authors:  Fernando Castro-Chavez
Journal:  J Theor Biol       Date:  2010-04-03       Impact factor: 2.691

Review 2.  Neuropathy- and myopathy-associated mutations in human small heat shock proteins: Characteristics and evolutionary history of the mutation sites.

Authors:  Rainer Benndorf; Jody L Martin; Sergei L Kosakovsky Pond; Joel O Wertheim
Journal:  Mutat Res Rev Mutat Res       Date:  2014-03-06       Impact factor: 5.657

3.  TRNA mutations that affect decoding fidelity deregulate development and the proteostasis network in zebrafish.

Authors:  Marisa Reverendo; Ana R Soares; Patrícia M Pereira; Laura Carreto; Violeta Ferreira; Evelina Gatti; Philippe Pierre; Gabriela R Moura; Manuel A Santos
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

4.  Genetic variants of the NOTCH3 gene in the elderly and magnetic resonance imaging correlates of age-related cerebral small vessel disease.

Authors:  Helena Schmidt; Marion Zeginigg; Marco Wiltgen; Paul Freudenberger; Katja Petrovic; Margherita Cavalieri; Pierre Gider; Christian Enzinger; Myriam Fornage; Stephanie Debette; Jerome I Rotter; Mohammad A Ikram; Lenore J Launer; Reinhold Schmidt
Journal:  Brain       Date:  2011-10-17       Impact factor: 13.501

5.  Global importance of RNA secondary structures in protein-coding sequences.

Authors:  Markus Fricke; Ruman Gerst; Bashar Ibrahim; Michael Niepmann; Manja Marz
Journal:  Bioinformatics       Date:  2019-02-15       Impact factor: 6.937

6.  Full-Length Transcriptome: A Reliable Alternative for Single-Cell RNA-Seq Analysis in the Spleen of Teleost Without Reference Genome.

Authors:  Lixing Huang; Ying Qiao; Wei Xu; Linfeng Gong; Rongchao He; Weilu Qi; Qiancheng Gao; Hongyan Cai; Hans-Peter Grossart; Qingpi Yan
Journal:  Front Immunol       Date:  2021-09-27       Impact factor: 7.561

7.  Co-optimization of therapeutic antibody affinity and specificity using machine learning models that generalize to novel mutational space.

Authors:  Emily K Makowski; Patrick C Kinnunen; Jie Huang; Lina Wu; Matthew D Smith; Tiexin Wang; Alec A Desai; Craig N Streu; Yulei Zhang; Jennifer M Zupancic; John S Schardt; Jennifer J Linderman; Peter M Tessier
Journal:  Nat Commun       Date:  2022-07-01       Impact factor: 17.694

8.  A model of k-mer surprisal to quantify local sequence information content surrounding splice regions.

Authors:  Sam Humphrey; Alastair Kerr; Magnus Rattray; Caroline Dive; Crispin J Miller
Journal:  PeerJ       Date:  2020-11-04       Impact factor: 2.984

  8 in total

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